Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G220300.1 | Wheat | cytosol | 95.61 | 95.61 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 94.74 | 94.74 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 94.3 | 94.3 |
| Zm00001d017390_P001 | Maize | cytosol | 69.3 | 70.22 |
| KXG31128 | Sorghum | cytosol | 69.3 | 70.22 |
| Zm00001d051288_P001 | Maize | cytosol | 67.98 | 68.89 |
| Os02t0643000-01 | Rice | plasma membrane | 75.88 | 66.8 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 66.23 | 60.64 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 62.28 | 59.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 60.53 | 57.74 |
| Solyc01g090910.2.1 | Tomato | nucleus | 56.58 | 55.36 |
| Solyc10g018350.1.1 | Tomato | cytosol | 57.02 | 54.62 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 56.58 | 53.97 |
| AT2G23830.1 | Thale cress | cytosol | 34.21 | 52.35 |
| KRH76164 | Soybean | endoplasmic reticulum | 55.26 | 52.28 |
| KRH65384 | Soybean | cytosol | 55.26 | 52.28 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 53.95 | 51.68 |
| GSMUA_Achr11P... | Banana | cytosol | 45.18 | 51.5 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 53.95 | 51.46 |
| CDY41153 | Canola | cytosol | 53.51 | 51.26 |
| CDX71796 | Canola | cytosol | 53.51 | 51.26 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 53.51 | 51.05 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 53.51 | 51.05 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 53.95 | 51.04 |
| Bra003313.1-P | Field mustard | cytosol | 49.56 | 50.67 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 53.07 | 50.63 |
| CDY48365 | Canola | cytosol | 53.07 | 50.63 |
| AT2G45140.1 | Thale cress | cytosol | 53.07 | 50.63 |
| Bra007547.1-P | Field mustard | cytosol | 52.63 | 50.42 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 53.07 | 50.42 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 53.07 | 50.42 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.63 | 50.21 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 52.63 | 49.79 |
| CDY57247 | Canola | cytosol | 52.19 | 49.58 |
| CDY56247 | Canola | cytosol | 52.19 | 49.58 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 48.25 | 48.46 |
| Solyc06g034220.2.1 | Tomato | nucleus | 46.05 | 46.26 |
| AT3G60600.1 | Thale cress | cytosol | 51.75 | 46.09 |
| PGSC0003DMT400066920 | Potato | cytosol | 53.95 | 46.07 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 56.14 | 45.71 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 57.02 | 44.07 |
| Zm00001d036342_P001 | Maize | cytosol | 45.18 | 41.2 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 41.23 | 40.17 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.53 | 40.0 |
| Bra035442.1-P | Field mustard | cytosol | 17.54 | 37.04 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.23 | 36.27 |
| HORVU2Hr1G097220.19 | Barley | plastid | 32.89 | 30.36 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 38.16 | 29.9 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 44.3 | 26.86 |
| HORVU2Hr1G003640.7 | Barley | cytosol | 24.56 | 26.67 |
| AT1G51270.3 | Thale cress | cytosol | 41.23 | 14.76 |
| HORVU3Hr1G006600.1 | Barley | cytosol | 27.19 | 8.72 |
| HORVU5Hr1G012420.3 | Barley | nucleus | 23.68 | 5.48 |
| HORVU6Hr1G011350.2 | Barley | cytosol | 1.32 | 0.24 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | UniProt:A0A287UD34 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:HORVU6Hr1G060760 | EnsemblPlants:HORVU6Hr1G060760.3 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF87 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000B473994 | InterPro:VAP | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:-:405010410..405014188
Molecular Weight (calculated)
25689.0 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.328
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSESRGLLG IDPNELRFAF ELKKQISCSL HLTNTTDQYI AFKVKTTSPK KYCVRPNNGI VPPRSTFDVL VTMQAQREAP PDMQCRDKFL VQSAVVSQDI
101: APKDISGDMF TKESGNVVDE VKLQVVYAPP SKPTSINEGS DQESLGSWSY QETTRELSEP ETIPSEPLAL ISKLMKEEKN FAIQENNKLR EELRLLRREI
201: SRQNVGFSLL FVLVAAILGI LLGFFMKR
101: APKDISGDMF TKESGNVVDE VKLQVVYAPP SKPTSINEGS DQESLGSWSY QETTRELSEP ETIPSEPLAL ISKLMKEEKN FAIQENNKLR EELRLLRREI
201: SRQNVGFSLL FVLVAAILGI LLGFFMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.