Factsheet for HORVU6Hr1G008670.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane

Predictor Summary:

golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	golgi
MultiLoc:	golgi
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G084420.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT2G32380.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G041500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	84.86	94.01
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	80.54	90.85
HORVU5Hr1G105780.5	Barley	endoplasmic reticulum, plasma membrane	55.68	62.8
HORVU5Hr1G105820.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	54.05	61.73
Os07t0458500-00	Rice	endoplasmic reticulum, plasma membrane	51.89	58.18
GSMUA_Achr4P33520_001	Banana	vacuole	49.73	55.09
GSMUA_Achr4P27700_001	Banana	vacuole	48.65	54.55
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	46.49	52.12
CDY55447	Canola	extracellular	29.73	48.25
PGSC0003DMT400065532	Potato	extracellular, plasma membrane, vacuole	43.24	48.19
Solyc07g052430.2.1	Tomato	plasma membrane	43.24	48.19
CDY68514	Canola	extracellular	29.19	47.37
AT2G32380.1	Thale cress	extracellular, plasma membrane	42.7	47.02
AT1G05210.1	Thale cress	extracellular, plasma membrane, vacuole	42.16	46.43
CDY46841	Canola	extracellular	41.62	45.83
CDY49514	Canola	extracellular	41.08	45.24
Bra015400.1-P	Field mustard	extracellular	41.08	45.24
PGSC0003DMT400065530	Potato	plasma membrane	40.54	45.18
AT1G05220.1	Thale cress	extracellular, plasma membrane, vacuole	38.92	45.0
Solyc07g052440.2.1	Tomato	extracellular, plasma membrane, vacuole	40.0	44.58
KRH56106	Soybean	extracellular, plasma membrane, vacuole	40.0	44.05
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	40.0	44.05
VIT_12s0059g02290.t01	Wine grape	extracellular, plasma membrane, vacuole	39.46	43.71
KRH25396	Soybean	extracellular, plasma membrane, vacuole	39.46	43.45
PGSC0003DMT400079615	Potato	extracellular	15.68	41.43

Protein Annotations

EnsemblPlants:HORVU6Hr1G008670.1	EnsemblPlantsGene:HORVU6Hr1G008670	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:EXPERA
InterPro:IPR033118	InterPro:Sigma2_recept	PANTHER:PTHR31204	PANTHER:PTHR31204:SF3	PFAM:PF10914	PFscan:PS51751
PIRSF:PIRSF031032	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B47C7B4	UniProt:A0A287T8P2	MapMan:35.2

Description

No Description!

Coordinates

chrchr6H:+:15823176..15824197

Molecular Weight (calculated)

20046.8 Da

IEP (calculated)

10.441

GRAVY (calculated)

0.543

Length

185 amino acids

Sequence
(BLAST)

001: WACINRERRP KRGQETQMMN AMGALSWAVD AVVVIYSLTV AISAPLIVAQ GILPRRLFPA PLVAFKLWYA AKFDDYLTAE PPAFFRGLNW LELVFQWPLN
101: IANVYGILAG RPWAATTSLM AGVSTLTSMA AILGDILGSG RATKKLLLVY VPYVAFAIVA ILRGLTSGSG SPAGSLASYA WKKII

Best Arabidopsis Sequence Match ( AT1G05210.1 )
(BLAST)

001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA

Arabidopsis Description

At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.