Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32380.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G041500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 91.46 | 89.82 |
| HORVU6Hr1G008670.1 | Barley | golgi, plasma membrane | 90.85 | 80.54 |
| TraesCS5D01G445500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 65.24 | 66.05 |
| TraesCS5D01G445200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 61.59 | 62.35 |
| Os07t0458500-00 | Rice | endoplasmic reticulum, plasma membrane | 59.76 | 59.39 |
| GSMUA_Achr4P33520_001 | Banana | vacuole | 54.88 | 53.89 |
| GSMUA_Achr4P27700_001 | Banana | vacuole | 53.66 | 53.33 |
| PGSC0003DMT400065532 | Potato | extracellular, plasma membrane, vacuole | 50.0 | 49.4 |
| TraesCS3D01G100000.1 | Wheat | mitochondrion | 54.88 | 47.87 |
| Solyc07g052430.2.1 | Tomato | plasma membrane | 48.17 | 47.59 |
| CDY55447 | Canola | extracellular | 32.32 | 46.49 |
| PGSC0003DMT400065530 | Potato | plasma membrane | 46.95 | 46.39 |
| Solyc07g052440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 46.34 | 45.78 |
| CDY68514 | Canola | extracellular | 31.71 | 45.61 |
| VIT_12s0059g02290.t01 | Wine grape | extracellular, plasma membrane, vacuole | 46.34 | 45.51 |
| AT1G05220.1 | Thale cress | extracellular, plasma membrane, vacuole | 43.9 | 45.0 |
| KRH56106 | Soybean | extracellular, plasma membrane, vacuole | 45.73 | 44.64 |
| AT2G32380.1 | Thale cress | extracellular, plasma membrane | 45.73 | 44.64 |
| AT1G05210.1 | Thale cress | extracellular, plasma membrane, vacuole | 45.73 | 44.64 |
| KRH25396 | Soybean | extracellular, plasma membrane, vacuole | 45.12 | 44.05 |
| CDY49514 | Canola | extracellular | 45.12 | 44.05 |
| CDY46841 | Canola | extracellular | 44.51 | 43.45 |
| Bra015400.1-P | Field mustard | extracellular | 43.9 | 42.86 |
| Bra030605.1-P | Field mustard | extracellular, plasma membrane, vacuole | 43.29 | 42.26 |
| PGSC0003DMT400079615 | Potato | extracellular | 17.68 | 41.43 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G047900.1 | EnsemblPlantsGene:TraesCS6D01G047900 | InterPro:EXPERA | InterPro:IPR033118 | InterPro:Sigma2_recept | PANTHER:PTHR31204 |
| PANTHER:PTHR31204:SF3 | PFAM:PF10914 | PFscan:PS51751 | PIRSF:PIRSF031032 | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:-:22268157..22268781
Molecular Weight (calculated)
17543.8 Da
IEP (calculated)
10.337
GRAVY (calculated)
0.795
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALSWAADA VVVIYSLTVA ITAPLVVAQG ILPRRLFPAP LVAFKLWYAV KFDDYLTAEP PAFFRGLNWL ELVFQWPLNV ANVYGILAGR PWAATTSLMA
101: GVSTLTSMAA ILGDILGSGR ATKKLLLVYV PYVAFAVIAI LRGLASGSRS PAGSLASYAW KKII
101: GVSTLTSMAA ILGDILGSGR ATKKLLLVYV PYVAFAVIAI LRGLASGSRS PAGSLASYAW KKII
001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA
Arabidopsis Description
At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.