Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32380.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G440800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 98.15 | 98.15 |
| HORVU5Hr1G105820.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 90.74 | 90.74 |
| TraesCS5A01G438000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 87.65 | 87.65 |
| TraesCS5D01G445500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.1 | 82.1 |
| EER98394 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 76.54 | 74.7 |
| Os07t0458700-01 | Rice | endoplasmic reticulum, plasma membrane | 71.6 | 69.88 |
| TraesCS6D01G047900.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 62.35 | 61.59 |
| GSMUA_Achr4P33520_001 | Banana | vacuole | 59.26 | 57.48 |
| GSMUA_Achr4P27700_001 | Banana | vacuole | 54.94 | 53.94 |
| Zm00001d019459_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 54.32 | 52.07 |
| TraesCS3D01G100000.1 | Wheat | mitochondrion | 59.88 | 51.6 |
| AT2G32380.1 | Thale cress | extracellular, plasma membrane | 48.15 | 46.43 |
| CDY49514 | Canola | extracellular | 47.53 | 45.83 |
| Bra030605.1-P | Field mustard | extracellular, plasma membrane, vacuole | 47.53 | 45.83 |
| VIT_12s0059g02290.t01 | Wine grape | extracellular, plasma membrane, vacuole | 46.91 | 45.51 |
| CDY46841 | Canola | extracellular | 46.91 | 45.24 |
| CDY55447 | Canola | extracellular | 31.48 | 44.74 |
| Bra015400.1-P | Field mustard | extracellular | 46.3 | 44.64 |
| CDY68514 | Canola | extracellular | 30.86 | 43.86 |
| KRH56106 | Soybean | extracellular, plasma membrane, vacuole | 45.06 | 43.45 |
| KRH25396 | Soybean | extracellular, plasma membrane, vacuole | 45.06 | 43.45 |
| PGSC0003DMT400065532 | Potato | extracellular, plasma membrane, vacuole | 44.44 | 43.37 |
| AT1G05220.1 | Thale cress | extracellular, plasma membrane, vacuole | 41.98 | 42.5 |
| AT1G05210.1 | Thale cress | extracellular, plasma membrane, vacuole | 43.83 | 42.26 |
| Solyc07g052430.2.1 | Tomato | plasma membrane | 43.21 | 42.17 |
| PGSC0003DMT400065530 | Potato | plasma membrane | 43.21 | 42.17 |
| Solyc07g052440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 42.59 | 41.57 |
| PGSC0003DMT400079615 | Potato | extracellular | 14.81 | 34.29 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G445200.1 | EnsemblPlantsGene:TraesCS5D01G445200 | InterPro:EXPERA | InterPro:IPR033118 | InterPro:Sigma2_recept | PANTHER:PTHR31204 |
| PANTHER:PTHR31204:SF3 | PFAM:PF10914 | PFscan:PS51751 | PIRSF:PIRSF031032 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:495630016..495630890
Molecular Weight (calculated)
17372.5 Da
IEP (calculated)
9.481
GRAVY (calculated)
0.675
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVSAVADA VVVLFSLTIA VGVPLIDAQA VLSHDAYPAQ LRDLKRWYAA EFDDYLMAQP PAFFRGLLCL ELAFLWPLSV ATVYGVLARR RWAATTSLMV
101: GVTTLTSLSA IFGEMLGSGK ATTKLLQMYV PYAVFAVIAI LRGLCSCSAP PSPASSARKK RV
101: GVTTLTSLSA IFGEMLGSGK ATTKLLQMYV PYAVFAVIAI LRGLCSCSAP PSPASSARKK RV
001: MGAFCKLIDA VLFLYFALMA VIAPLIDGQT SLPGDIFPAF IVDLNRWYID EFGDYLVKEK PHFLVGLVWH ELLLLWPLSI VNVYAILAGK SWFGTTSMVY
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA
Arabidopsis Description
At2g32380 [Source:UniProtKB/TrEMBL;Acc:Q9ZV66]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.