CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX84933
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	CDX84933	AT1G27300.1	21798944
AT2G32380.1	CDY03907	AT1G27300.1	21798944
AT2G32380.1	CDY15722	AT1G27300.1	21798944
AT2G32380.1	CDY27605	AT1G27300.1	21798944
AT2G32380.1	CDX78905	AT4G19030.1	21798944
AT2G32380.1	CDX98596	AT4G19030.1	21798944
AT2G32380.1	CDX99411	AT4G19030.1	21798944
AT2G32380.1	CDY01565	AT4G19030.1	21798944
AT2G32380.1	CDX70995	AT5G22290.1	21798944
AT2G32380.1	CDX88803	AT5G22290.1	21798944
AT2G32380.1	CDX92368	AT5G22290.1	21798944
AT2G32380.1	CDY09128	AT5G22290.1	21798944
AT2G32380.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68514	Canola	extracellular	95.61	95.61
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	92.98	63.1
CDY49514	Canola	extracellular	76.32	51.79
CDY46841	Canola	extracellular	74.56	50.6
PGSC0003DMT400079615	Potato	extracellular	30.7	50.0
AT2G32380.1	Thale cress	extracellular, plasma membrane	72.81	49.4
Solyc07g052430.2.1	Tomato	plasma membrane	55.26	37.95
PGSC0003DMT400065532	Potato	extracellular, plasma membrane, vacuole	55.26	37.95
PGSC0003DMT400065530	Potato	plasma membrane	54.39	37.35
Solyc07g052440.2.1	Tomato	extracellular, plasma membrane, vacuole	54.39	37.35
KRH56106	Soybean	extracellular, plasma membrane, vacuole	54.39	36.9
VIT_12s0059g02290.t01	Wine grape	extracellular, plasma membrane, vacuole	53.51	36.53
KRH25396	Soybean	extracellular, plasma membrane, vacuole	52.63	35.71
HORVU5Hr1G105780.5	Barley	endoplasmic reticulum, plasma membrane	48.25	33.54
GSMUA_Achr4P33520_001	Banana	vacuole	49.12	33.53
HORVU5Hr1G105820.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	47.37	33.33
TraesCS5A01G438000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.37	33.33
Os07t0458700-01	Rice	endoplasmic reticulum, plasma membrane	48.25	33.13
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.49	32.32
Os07t0458500-00	Rice	endoplasmic reticulum, plasma membrane	46.49	32.12
TraesCS5A01G438300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.61	32.1
TraesCS3B01G116100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	41.23	31.76
TraesCS6A01G041500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.49	31.74
TraesCS5D01G445500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.74	31.48
TraesCS5D01G445200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.74	31.48
TraesCS5B01G440800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.74	31.48
Zm00001d019459_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.49	31.36
TraesCS5B01G441200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.74	31.1
GSMUA_Achr4P27700_001	Banana	vacuole	44.74	30.91
Os03t0646400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	44.74	30.72
TraesCS3A01G099700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.86	30.12
EER98394	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	43.86	30.12
HORVU6Hr1G008670.1	Barley	golgi, plasma membrane	48.25	29.73
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	42.11	29.09
EER98395	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	42.11	28.24
TraesCS3D01G100000.1	Wheat	mitochondrion	40.35	24.47

Protein Annotations

EnsemblPlants:CDY55447	EnsemblPlantsGene:GSBRNA2T00016846001	GO:A0A078IYI7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:EXPERA	InterPro:IPR033118	PANTHER:PTHR31204	PANTHER:PTHR31204:SF1	PFAM:PF10914	PFscan:PS51751
ProteinID:CDY55447	ProteinID:CDY55447.1	TMHMM:TMhelix	UniParc:UPI0004EE7CFB	UniProt:A0A078IYI7	MapMan:35.2

Description

BnaC08g46350DBnaC08g46350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYI7]

Coordinates

chrLK033403:-:33544..33888

Molecular Weight (calculated)

12763.9 Da

IEP (calculated)

4.326

GRAVY (calculated)

0.977

Length

114 amino acids

Sequence
(BLAST)

001: MGAFGKLIDA ILFLYFALMV FIAPLFDAQT VLPKEIYPAI LTDLNRNYIA DFGDYLLAEE PHFLVGLIWH ELVLLWPLSI ANVYAILAGK SWFATTCLLY
101: GASVVTSMVQ LISF

Best Arabidopsis Sequence Match ( AT1G05210.1 )
(BLAST)

001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA

Arabidopsis Description

At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.