Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 5
- vacuole 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32380.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P33520_001 | Banana | vacuole | 74.55 | 73.65 |
| Os07t0458700-01 | Rice | endoplasmic reticulum, plasma membrane | 58.79 | 58.43 |
| HORVU5Hr1G105820.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 56.97 | 58.02 |
| TraesCS5B01G441200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 56.36 | 56.71 |
| TraesCS5A01G438000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 55.15 | 56.17 |
| TraesCS5A01G438300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 55.15 | 56.17 |
| TraesCS5D01G445500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 54.55 | 55.56 |
| TraesCS5B01G440800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 54.55 | 55.56 |
| EER98394 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 55.76 | 55.42 |
| TraesCS5D01G445200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 53.94 | 54.94 |
| HORVU5Hr1G105780.5 | Barley | endoplasmic reticulum, plasma membrane | 54.55 | 54.88 |
| TraesCS6D01G047900.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 53.33 | 53.66 |
| TraesCS3A01G099700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 52.73 | 52.41 |
| Os07t0458500-00 | Rice | endoplasmic reticulum, plasma membrane | 52.12 | 52.12 |
| TraesCS6A01G041500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 52.73 | 52.1 |
| Os03t0646400-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 51.52 | 51.2 |
| HORVU3Hr1G018080.2 | Barley | endoplasmic reticulum, plasma membrane | 50.3 | 50.3 |
| VIT_12s0059g02290.t01 | Wine grape | extracellular, plasma membrane, vacuole | 49.7 | 49.1 |
| HORVU6Hr1G008670.1 | Barley | golgi, plasma membrane | 54.55 | 48.65 |
| TraesCS3B01G116100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 43.64 | 48.65 |
| AT2G32380.1 | Thale cress | extracellular, plasma membrane | 49.09 | 48.21 |
| KRH56106 | Soybean | extracellular, plasma membrane, vacuole | 48.48 | 47.62 |
| KRH25396 | Soybean | extracellular, plasma membrane, vacuole | 48.48 | 47.62 |
| CDY49514 | Canola | extracellular | 48.48 | 47.62 |
| CDY46841 | Canola | extracellular | 47.88 | 47.02 |
| Solyc07g052430.2.1 | Tomato | plasma membrane | 47.27 | 46.99 |
| Bra015400.1-P | Field mustard | extracellular | 47.27 | 46.43 |
| AT1G05210.1 | Thale cress | extracellular, plasma membrane, vacuole | 47.27 | 46.43 |
| PGSC0003DMT400065530 | Potato | plasma membrane | 46.67 | 46.39 |
| Solyc07g052440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 46.67 | 46.39 |
| TraesCS3D01G100000.1 | Wheat | mitochondrion | 52.73 | 46.28 |
| EER98395 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 47.27 | 45.88 |
| PGSC0003DMT400065532 | Potato | extracellular, plasma membrane, vacuole | 46.06 | 45.78 |
| AT1G05220.1 | Thale cress | extracellular, plasma membrane, vacuole | 44.24 | 45.62 |
| CDY68514 | Canola | extracellular | 30.91 | 44.74 |
| CDY55447 | Canola | extracellular | 30.91 | 44.74 |
| Bra030605.1-P | Field mustard | extracellular, plasma membrane, vacuole | 44.85 | 44.05 |
| PGSC0003DMT400079615 | Potato | extracellular | 17.58 | 41.43 |
| Zm00001d019459_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 42.42 | 41.42 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P27700_001 | EnsemblPlants:GSMUA_Achr4T27700_001 | EnsemblPlantsGene:GSMUA_Achr4G27700_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:EXPERA | InterPro:IPR033118 | InterPro:Sigma2_recept | PANTHER:PTHR31204 | PANTHER:PTHR31204:SF3 | PFAM:PF10914 |
| PFscan:PS51751 | PIRSF:PIRSF031032 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002957A0E | UniProt:M0SSN2 |
| MapMan:35.2 | : | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27700_001]
Coordinates
chr4:-:26450395..26453504
Molecular Weight (calculated)
18057.4 Da
IEP (calculated)
9.947
GRAVY (calculated)
0.707
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFISGLVNV VVVLFSCLVA VAVPLIVAQI CLPGWLYPAP LVELKQWYGE VFGDYLVTEK PHFFTGLVWV DIAFVWPLSL ANVYGILARR PWVSTTSLMA
101: GVSTATSMAA IMAELLGSGK ASEQLLQIYF PFGVFALLAI LRGLFYRPRR ATSTSHASSS RKKRA
101: GVSTATSMAA IMAELLGSGK ASEQLLQIYF PFGVFALLAI LRGLFYRPRR ATSTSHASSS RKKRA
001: MGAFCKLIDA VLFLYFALMA VIAPLIDGQT SLPGDIFPAF IVDLNRWYID EFGDYLVKEK PHFLVGLVWH ELLLLWPLSI VNVYAILAGK SWFGTTSMVY
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA
Arabidopsis Description
At2g32380 [Source:UniProtKB/TrEMBL;Acc:Q9ZV66]
SUBAcon: [extracellular,plasma membrane]
SUBAcon: [extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.