Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32380.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT2G32380.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G445500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 92.07 | 93.21 |
| TraesCS5A01G438300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 90.85 | 91.98 |
| HORVU5Hr1G105780.5 | Barley | endoplasmic reticulum, plasma membrane | 85.37 | 85.37 |
| TraesCS5B01G440800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 78.05 | 79.01 |
| EER98394 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 74.39 | 73.49 |
| Os07t0458700-01 | Rice | endoplasmic reticulum, plasma membrane | 72.56 | 71.69 |
| GSMUA_Achr4P33520_001 | Banana | vacuole | 60.37 | 59.28 |
| TraesCS3B01G116100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 52.44 | 58.11 |
| GSMUA_Achr4P27700_001 | Banana | vacuole | 56.71 | 56.36 |
| Zm00001d019459_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 52.44 | 50.89 |
| VIT_12s0059g02290.t01 | Wine grape | extracellular, plasma membrane, vacuole | 47.56 | 46.71 |
| CDY55447 | Canola | extracellular | 31.1 | 44.74 |
| CDY46841 | Canola | extracellular | 45.12 | 44.05 |
| PGSC0003DMT400065532 | Potato | extracellular, plasma membrane, vacuole | 44.51 | 43.98 |
| CDY49514 | Canola | extracellular | 44.51 | 43.45 |
| Bra015400.1-P | Field mustard | extracellular | 44.51 | 43.45 |
| CDY68514 | Canola | extracellular | 29.88 | 42.98 |
| KRH25396 | Soybean | extracellular, plasma membrane, vacuole | 43.9 | 42.86 |
| KRH56106 | Soybean | extracellular, plasma membrane, vacuole | 43.9 | 42.86 |
| Bra030605.1-P | Field mustard | extracellular, plasma membrane, vacuole | 43.9 | 42.86 |
| AT2G32380.1 | Thale cress | extracellular, plasma membrane | 43.9 | 42.86 |
| Solyc07g052430.2.1 | Tomato | plasma membrane | 43.29 | 42.77 |
| AT1G05220.1 | Thale cress | extracellular, plasma membrane, vacuole | 41.46 | 42.5 |
| AT1G05210.1 | Thale cress | extracellular, plasma membrane, vacuole | 42.68 | 41.67 |
| PGSC0003DMT400065530 | Potato | plasma membrane | 41.46 | 40.96 |
| Solyc07g052440.2.1 | Tomato | extracellular, plasma membrane, vacuole | 40.85 | 40.36 |
| PGSC0003DMT400079615 | Potato | extracellular | 14.63 | 34.29 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G441200.1 | EnsemblPlantsGene:TraesCS5B01G441200 | InterPro:EXPERA | InterPro:IPR033118 | InterPro:Sigma2_recept | PANTHER:PTHR31204 |
| PANTHER:PTHR31204:SF3 | PFAM:PF10914 | PFscan:PS51751 | PIRSF:PIRSF031032 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:613110011..613110766
Molecular Weight (calculated)
17791.1 Da
IEP (calculated)
10.677
GRAVY (calculated)
0.618
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVSAVADA VVVLFSLTIA MAAPLIGAQS VLPRYLYPAP LRDFKRWYAA EFDDYLMAQP PAFLRGIFWL EIAFLWPLSV ATIYGVLARR RWAATTSLMA
101: GVSTLTFMSA ILGEMLGSGR ATPRLLQLYG PYVVFAVIAI LRGLRSCSAS APPSSASSAR KKRV
101: GVSTLTFMSA ILGEMLGSGR ATPRLLQLYG PYVVFAVIAI LRGLRSCSAS APPSSASSAR KKRV
001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA
Arabidopsis Description
At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [extracellular,plasma membrane,vacuole]
SUBAcon: [extracellular,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.