Factsheet for PGSC0003DMT400065532

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 6
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, peroxisome, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT2G32380.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G32380.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT2G32380.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G32380.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052430.2.1	Tomato	plasma membrane	93.98	93.98
PGSC0003DMT400079615	Potato	extracellular	39.16	92.86
PGSC0003DMT400065530	Potato	plasma membrane	85.54	85.54
KRH56106	Soybean	extracellular, plasma membrane, vacuole	63.25	62.5
KRH25396	Soybean	extracellular, plasma membrane, vacuole	63.25	62.5
VIT_12s0059g02290.t01	Wine grape	extracellular, plasma membrane, vacuole	59.64	59.28
AT2G32380.1	Thale cress	extracellular, plasma membrane	56.02	55.36
CDY55447	Canola	extracellular	37.95	55.26
CDY68514	Canola	extracellular	37.35	54.39
Bra015400.1-P	Field mustard	extracellular	54.82	54.17
CDY49514	Canola	extracellular	54.82	54.17
AT1G05210.1	Thale cress	extracellular, plasma membrane, vacuole	54.82	54.17
CDY46841	Canola	extracellular	54.22	53.57
AT1G05220.1	Thale cress	extracellular, plasma membrane, vacuole	49.4	51.25
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	51.81	51.19
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.4	50.0
TraesCS6A01G041500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.4	49.1
Os07t0458700-01	Rice	endoplasmic reticulum, plasma membrane	48.19	48.19
EER98394	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	48.19	48.19
GSMUA_Achr4P33520_001	Banana	vacuole	47.59	47.31
HORVU5Hr1G105780.5	Barley	endoplasmic reticulum, plasma membrane	46.39	46.95
HORVU5Hr1G105820.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	45.18	46.3
TraesCS5A01G438300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.18	46.3
GSMUA_Achr4P27700_001	Banana	vacuole	45.78	46.06
TraesCS5D01G445500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.98	45.06
TraesCS5B01G441200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.98	44.51
TraesCS5A01G438000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.37	44.44
TraesCS5B01G440800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.37	44.44
TraesCS5D01G445200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.37	44.44
Os07t0458500-00	Rice	endoplasmic reticulum, plasma membrane	43.98	44.24
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	43.98	44.24
TraesCS3A01G099700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.98	43.98
HORVU6Hr1G008670.1	Barley	golgi, plasma membrane	48.19	43.24
TraesCS3B01G116100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	37.35	41.89
Os03t0646400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	40.96	40.96
EER98395	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.96	40.0
TraesCS3D01G100000.1	Wheat	mitochondrion	44.58	39.36
Zm00001d019459_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	38.55	37.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400065532	EnsemblPlantsGene:PGSC0003DMG400025497	EntrezGene:102583523	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:EXPERA	InterPro:IPR033118	InterPro:Sigma2_recept	PANTHER:PTHR31204	PANTHER:PTHR31204:SF1	PFAM:PF10914
PFscan:PS51751	PGSC:PGSC0003DMG400025497	PIRSF:PIRSF031032	RefSeq:XP_006367282.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002963A41	UniProt:M1CE66	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025497]

Coordinates

chr7:+:47066500..47070538

Molecular Weight (calculated)

18534.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

0.638

Length

166 amino acids

Sequence
(BLAST)

001: MGAFVKLLDL LLFVYFLLIA IVAPLFDGQV ALPKHIFPPA LVDLKSWYTQ QYGDYLVYEK PHFFVGLIWL ELLFAWPLSV LSLYAIAAGK SWIKTTSLMY
101: GVSTLTAMVA ILSEMKNSER ASDKLLMVYY PFLGFAVLAI LRGLLPHSGK SASIGKRSVI GRKKKA

Best Arabidopsis Sequence Match ( AT2G32380.1 )
(BLAST)

001: MGAFCKLIDA VLFLYFALMA VIAPLIDGQT SLPGDIFPAF IVDLNRWYID EFGDYLVKEK PHFLVGLVWH ELLLLWPLSI VNVYAILAGK SWFGTTSMVY
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA

Arabidopsis Description

At2g32380 [Source:UniProtKB/TrEMBL;Acc:Q9ZV66]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.