Factsheet for TraesCS3D01G100000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT2G32380.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT2G32380.1	TraesCS2D01G345400.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	78.19	89.09
TraesCS3A01G099700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	77.13	87.35
TraesCS3B01G116100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.43	83.11
Os03t0646400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	65.96	74.7
EER98395	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	61.17	67.65
TraesCS5D01G445500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.13	60.49
TraesCS5D01G445200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.6	59.88
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	47.87	54.88
GSMUA_Achr4P27700_001	Banana	vacuole	46.28	52.73
GSMUA_Achr4P33520_001	Banana	vacuole	45.21	50.9
PGSC0003DMT400065532	Potato	extracellular, plasma membrane, vacuole	39.36	44.58
AT1G05210.1	Thale cress	extracellular, plasma membrane, vacuole	38.3	42.86
KRH56106	Soybean	extracellular, plasma membrane, vacuole	38.3	42.86
KRH25396	Soybean	extracellular, plasma membrane, vacuole	38.3	42.86
Solyc07g052440.2.1	Tomato	extracellular, plasma membrane, vacuole	37.77	42.77
PGSC0003DMT400065530	Potato	plasma membrane	37.77	42.77
AT1G05220.1	Thale cress	extracellular, plasma membrane, vacuole	36.17	42.5
CDY49514	Canola	extracellular	37.77	42.26
AT2G32380.1	Thale cress	extracellular, plasma membrane	37.77	42.26
Solyc07g052430.2.1	Tomato	plasma membrane	37.23	42.17
Bra015400.1-P	Field mustard	extracellular	37.23	41.67
PGSC0003DMT400079615	Potato	extracellular	15.43	41.43
VIT_12s0059g02290.t01	Wine grape	extracellular, plasma membrane, vacuole	36.7	41.32
CDY46841	Canola	extracellular	36.17	40.48
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	36.17	40.48
CDY55447	Canola	extracellular	24.47	40.35
CDY68514	Canola	extracellular	23.4	38.6

Protein Annotations

EnsemblPlants:TraesCS3D01G100000.1	EnsemblPlantsGene:TraesCS3D01G100000	InterPro:EXPERA	InterPro:IPR033118	InterPro:Sigma2_recept	PANTHER:PTHR31204
PANTHER:PTHR31204:SF3	PFAM:PF10914	PFscan:PS51751	PIRSF:PIRSF031032	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3D:-:51734130..51735064

Molecular Weight (calculated)

20347.4 Da

IEP (calculated)

9.985

GRAVY (calculated)

0.713

Length

188 amino acids

Sequence
(BLAST)

001: MLAINRCTST APLRSLRPQS PQPMGAVSAL ADVVVAPFSL IMAVAAPLFD SQVVLPRRLY PAPLVDIHQW FTVAFGHYLV ADPPPFFLGL VWLDLAFLWP
101: VCVANLYGIL TRRRWSAATS LMAGVYMLTY LSAILGDMFG SGKATPRLLQ LYVPFIVFAV TAVLRGLCSC SVPFTAVTSA ASAQKKKA

Best Arabidopsis Sequence Match ( AT1G05210.1 )
(BLAST)

001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA

Arabidopsis Description

At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.