Factsheet for PGSC0003DMT400079615

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, mitochondrion, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT2G32380.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G32380.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT2G32380.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G32380.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065532	Potato	extracellular, plasma membrane, vacuole	92.86	39.16
Solyc07g052430.2.1	Tomato	plasma membrane	88.57	37.35
PGSC0003DMT400065530	Potato	plasma membrane	78.57	33.13
CDY55447	Canola	extracellular	50.0	30.7
CDY68514	Canola	extracellular	48.57	29.82
KRH56106	Soybean	extracellular, plasma membrane, vacuole	58.57	24.4
KRH25396	Soybean	extracellular, plasma membrane, vacuole	58.57	24.4
VIT_12s0059g02290.t01	Wine grape	extracellular, plasma membrane, vacuole	57.14	23.95
AT2G32380.1	Thale cress	extracellular, plasma membrane	57.14	23.81
Bra015400.1-P	Field mustard	extracellular	57.14	23.81
AT1G05210.1	Thale cress	extracellular, plasma membrane, vacuole	57.14	23.81
CDY49514	Canola	extracellular	55.71	23.21
CDY46841	Canola	extracellular	54.29	22.62
AT1G05220.1	Thale cress	extracellular, plasma membrane, vacuole	51.43	22.5
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	48.57	20.24
TraesCS3B01G116100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.57	18.24
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.43	17.68
GSMUA_Achr4P27700_001	Banana	vacuole	41.43	17.58
EER98394	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	41.43	17.47
TraesCS6A01G041500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.43	17.37
GSMUA_Achr4P33520_001	Banana	vacuole	41.43	17.37
HORVU5Hr1G105780.5	Barley	endoplasmic reticulum, plasma membrane	40.0	17.07
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	40.0	16.97
Os07t0458700-01	Rice	endoplasmic reticulum, plasma membrane	40.0	16.87
Os07t0458500-00	Rice	endoplasmic reticulum, plasma membrane	38.57	16.36
Zm00001d019459_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	38.57	15.98
HORVU6Hr1G008670.1	Barley	golgi, plasma membrane	41.43	15.68
TraesCS3A01G099700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	37.14	15.66
TraesCS5A01G438300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	35.71	15.43
HORVU5Hr1G105820.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	35.71	15.43
TraesCS3D01G100000.1	Wheat	mitochondrion	41.43	15.43
Os03t0646400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	35.71	15.06
TraesCS5B01G440800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.29	14.81
TraesCS5D01G445200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.29	14.81
TraesCS5D01G445500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.29	14.81
TraesCS5B01G441200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.29	14.63
TraesCS5A01G438000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.86	14.2
EER98395	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	32.86	13.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400079615	EnsemblPlantsGene:PGSC0003DMG400031004	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:EXPERA
InterPro:IPR033118	PANTHER:PTHR31204	PANTHER:PTHR31204:SF1	PFAM:PF10914	PFscan:PS51751	PGSC:PGSC0003DMG400031004
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002954435	UniProt:M1D256	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400031004]

Coordinates

chr5:+:8367781..8368083

Molecular Weight (calculated)

8139.2 Da

IEP (calculated)

7.672

GRAVY (calculated)

0.944

Length

70 amino acids

Sequence
(BLAST)

1: MGAFVKLLDL LLFVYFLLIA IVAPLFNGQV ALPKHIFPPL LVDLKSWYTQ QYGDYLVYEK PHFFVVLFGF

Best Arabidopsis Sequence Match ( AT2G32380.1 )
(BLAST)

001: MGAFCKLIDA VLFLYFALMA VIAPLIDGQT SLPGDIFPAF IVDLNRWYID EFGDYLVKEK PHFLVGLVWH ELLLLWPLSI VNVYAILAGK SWFGTTSMVY
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA

Arabidopsis Description

At2g32380 [Source:UniProtKB/TrEMBL;Acc:Q9ZV66]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.