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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, plasma membrane, vacuole

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 6
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G32380.1 Bra030034.1-P AT1G27300.1 21798944
AT2G32380.1 Bra032817.1-P AT1G27300.1 21798944
AT2G32380.1 Bra012567.1-P AT4G19030.1 21798944
AT2G32380.1 Bra013361.1-P AT4G19030.1 21798944
AT2G32380.1 Bra002403.1-P AT5G22290.1 21798944
AT2G32380.1 Bra006619.1-P AT5G22290.1 21798944
AT2G32380.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68514 Canola extracellular 64.29 94.74
CDY55447 Canola extracellular 63.1 92.98
Bra015400.1-P Field mustard extracellular 80.95 80.95
AT2G32380.1 Thale cress extracellular, plasma membrane 75.6 75.6
PGSC0003DMT400065530 Potato plasma membrane 51.79 52.41
Solyc07g052430.2.1 Tomato plasma membrane 51.79 52.41
PGSC0003DMT400065532 Potato extracellular, plasma membrane, vacuole 51.19 51.81
Solyc07g052440.2.1 Tomato extracellular, plasma membrane, vacuole 51.19 51.81
VIT_12s0059g02290.t01 Wine grape extracellular, plasma membrane, vacuole 51.19 51.5
KRH56106 Soybean extracellular, plasma membrane, vacuole 51.19 51.19
KRH25396 Soybean extracellular, plasma membrane, vacuole 50.6 50.6
HORVU5Hr1G105820.1 Barley endoplasmic reticulum, plasma membrane, vacuole 48.21 50.0
HORVU5Hr1G105780.5 Barley endoplasmic reticulum, plasma membrane 48.21 49.39
TraesCS5A01G438000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 47.62 49.38
PGSC0003DMT400079615 Potato extracellular 20.24 48.57
TraesCS5D01G445200.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 45.83 47.53
TraesCS5B01G440800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 45.83 47.53
Os07t0458700-01 Rice endoplasmic reticulum, plasma membrane 46.43 46.99
GSMUA_Achr4P33520_001 Banana vacuole 46.43 46.71
Os07t0458500-00 Rice endoplasmic reticulum, plasma membrane 45.83 46.67
TraesCS5A01G438300.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 44.05 45.68
EER98394 Sorghum endoplasmic reticulum, plasma membrane, vacuole 44.64 45.18
TraesCS5D01G445500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 43.45 45.06
GSMUA_Achr4P27700_001 Banana vacuole 44.05 44.85
TraesCS5B01G441200.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 42.86 43.9
TraesCS3A01G099700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 42.86 43.37
TraesCS6D01G047900.1 Wheat endoplasmic reticulum, extracellular, vacuole 42.26 43.29
TraesCS6A01G041500.1 Wheat endoplasmic reticulum, extracellular, vacuole 42.26 42.52
HORVU3Hr1G018080.2 Barley endoplasmic reticulum, plasma membrane 41.07 41.82
Os03t0646400-01 Rice endoplasmic reticulum, plasma membrane, vacuole 41.07 41.57
EER98395 Sorghum endoplasmic reticulum, plasma membrane, vacuole 40.48 40.0
HORVU6Hr1G008670.1 Barley golgi, plasma membrane 44.05 40.0
TraesCS3B01G116100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 34.52 39.19
TraesCS3D01G100000.1 Wheat mitochondrion 40.48 36.17
Zm00001d019459_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 33.33 33.14
Protein Annotations
EnsemblPlants:Bra030605.1EnsemblPlants:Bra030605.1-PEnsemblPlantsGene:Bra030605GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:EXPERAInterPro:IPR033118InterPro:Sigma2_receptPANTHER:PTHR31204PANTHER:PTHR31204:SF3PFAM:PF10914
PFscan:PS51751PIRSF:PIRSF031032TMHMM:TMhelixUniParc:UPI00025454F5UniProt:M4EP85MapMan:35.2
Description
AT1G05210 (E=3e-072) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32380.1); Has 101 Blast hits to 101 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Coordinates
chrA08:-:21122547..21123606
Molecular Weight (calculated)
18422.1 Da
IEP (calculated)
9.587
GRAVY (calculated)
0.614
Length
168 amino acids
Sequence
(BLAST)
001: MGAFGKLIDA ILFLYFALMV FIPPLFDAQT VLPKQIYPAI LTDLNRNYIA DFGDYLLAEE PHFLVGLIWH ELVLLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASVVTSMSA VLGEMIGSGK ASEKLLMMYV PFMGIGILAT LRGLVSRSTK STGSVDKRSA VKPRRKLA
Best Arabidopsis Sequence Match ( AT1G05210.1 )
(BLAST)
001: MGALGKLIDV ALFVYFVSMA IIAPLIDGQT SLPSGIYPAF LTDLKSKYIA DFGDYLLMEK PHFLVGLVWH ELLFLWPLSI ANVYAILAGK SWFGTTCLLY
101: GASLVTSMAA ILGDMIGSGK ASDRLLMMYV PFMGFGILAV LRGLVYRSTK NTGSSGKRST IMPRRKLA
Arabidopsis Description
At1g05210 [Source:UniProtKB/TrEMBL;Acc:O23047]
SUBAcon: [extracellular,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.