Factsheet for VIT_12s0059g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32380.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT2G32380.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT2G32380.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25396	Soybean	extracellular, plasma membrane, vacuole	60.48	60.12
KRH56106	Soybean	extracellular, plasma membrane, vacuole	60.48	60.12
PGSC0003DMT400065532	Potato	extracellular, plasma membrane, vacuole	59.28	59.64
PGSC0003DMT400065530	Potato	plasma membrane	58.08	58.43
Solyc07g052440.2.1	Tomato	extracellular, plasma membrane, vacuole	58.08	58.43
Solyc07g052430.2.1	Tomato	plasma membrane	57.48	57.83
PGSC0003DMT400079615	Potato	extracellular	23.95	57.14
CDY49514	Canola	extracellular	54.49	54.17
AT2G32380.1	Thale cress	extracellular, plasma membrane	54.49	54.17
Bra015400.1-P	Field mustard	extracellular	53.89	53.57
CDY46841	Canola	extracellular	53.89	53.57
CDY55447	Canola	extracellular	36.53	53.51
CDY68514	Canola	extracellular	35.93	52.63
Os07t0458700-01	Rice	endoplasmic reticulum, plasma membrane	52.1	52.41
Bra030605.1-P	Field mustard	extracellular, plasma membrane, vacuole	51.5	51.19
AT1G05210.1	Thale cress	extracellular, plasma membrane, vacuole	50.3	50.0
GSMUA_Achr4P27700_001	Banana	vacuole	49.1	49.7
GSMUA_Achr4P33520_001	Banana	vacuole	49.1	49.1
EER98394	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	48.5	48.8
HORVU5Hr1G105780.5	Barley	endoplasmic reticulum, plasma membrane	47.9	48.78
TraesCS5A01G438300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.31	48.77
Os07t0458500-00	Rice	endoplasmic reticulum, plasma membrane	47.9	48.48
HORVU5Hr1G105820.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	46.71	48.15
AT1G05220.1	Thale cress	extracellular, plasma membrane, vacuole	46.11	48.12
TraesCS5B01G441200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.71	47.56
TraesCS5D01G445500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.11	47.53
TraesCS5D01G445200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.51	46.91
TraesCS5B01G440800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.51	46.91
TraesCS5A01G438000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.51	46.91
TraesCS6D01G047900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.51	46.34
TraesCS6A01G041500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	44.91	44.91
Os03t0646400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	42.52	42.77
HORVU3Hr1G018080.2	Barley	endoplasmic reticulum, plasma membrane	41.92	42.42
EER98395	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	41.92	41.18
TraesCS3A01G099700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.72	40.96
HORVU6Hr1G008670.1	Barley	golgi, plasma membrane	43.71	39.46
TraesCS3B01G116100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.73	39.19
Zm00001d019459_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	38.92	38.46
TraesCS3D01G100000.1	Wheat	mitochondrion	41.32	36.7

Protein Annotations

EntrezGene:100258497	wikigene:100258497	MapMan:35.2	EMBL:AM441429	ProteinID:CAN76235	ProteinID:CAN76235.1
ProteinID:CCB52044	ProteinID:CCB52044.1	InterPro:EXPERA	UniProt:F6HIJ8	EMBL:FN595765	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0016020	GO:GO:0016021
InterPro:IPR033118	EntrezGene:LOC100258497	wikigene:LOC100258497	PFAM:PF10914	PIRSF:PIRSF031032	PFscan:PS51751
PANTHER:PTHR31204	PANTHER:PTHR31204:SF1	InterPro:Sigma2_recept	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015CB2D5
ArrayExpress:VIT_12s0059g02290	EnsemblPlantsGene:VIT_12s0059g02290	EnsemblPlants:VIT_12s0059g02290.t01	unigene:Vvi.15221	RefSeq:XP_002279747	RefSeq:XP_002279747.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:7078551..7079465

Molecular Weight (calculated)

18207.5 Da

IEP (calculated)

8.640

GRAVY (calculated)

0.712

Length

167 amino acids

Sequence
(BLAST)

001: MGVVTKLADA FLFVFFLLTA VLAPLFDAQS CLPETFFPKS LVDLKDWYSV EYGDYMVAEK PGFYVGVIWL ELLFQWPLSL LNLYAVVAGA AWFPTTCLIY
101: GASVLGSMAA IIGELVTSGR ASETLLMVYY PFLGLAVLAI LRGLLSRSSA RSTPTSAKGL ASRKKRA

Best Arabidopsis Sequence Match ( AT2G32380.1 )
(BLAST)

001: MGAFCKLIDA VLFLYFALMA VIAPLIDGQT SLPGDIFPAF IVDLNRWYID EFGDYLVKEK PHFLVGLVWH ELLLLWPLSI VNVYAILAGK SWFGTTSMVY
101: GASVVTSMAA ILGEMIGSGK ASEKLLMMYV PFMGVGILAL LRGLLSQSNK SGGAVGKRPA ILARRKRA

Arabidopsis Description

At2g32380 [Source:UniProtKB/TrEMBL;Acc:Q9ZV66]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.