Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27605 | Canola | cytosol | 95.43 | 93.53 |
| CDY03907 | Canola | cytosol | 76.65 | 77.84 |
| CDY15722 | Canola | cytosol | 77.67 | 77.27 |
| AT1G27300.1 | Thale cress | nucleus | 70.56 | 69.5 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 32.99 | 33.16 |
| KRH31520 | Soybean | cytosol | 22.84 | 29.61 |
| Solyc05g015640.2.1 | Tomato | cytosol | 28.43 | 27.72 |
| PGSC0003DMT400084737 | Potato | cytosol | 28.93 | 27.54 |
| KRG97393 | Soybean | nucleus | 25.89 | 27.13 |
| KRH76090 | Soybean | nucleus | 14.72 | 25.22 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 24.37 | 24.49 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 23.86 | 24.48 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 23.86 | 24.23 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 23.35 | 23.96 |
| Zm00001d050563_P001 | Maize | nucleus | 24.37 | 23.76 |
| EES05123 | Sorghum | nucleus | 24.87 | 22.79 |
| Zm00001d016570_P001 | Maize | cytosol | 23.86 | 21.86 |
| Os02t0509600-01 | Rice | plasma membrane | 22.84 | 21.33 |
Protein Annotations
| EnsemblPlants:CDX84933 | EnsemblPlantsGene:GSBRNA2T00142286001 | ncoils:Coil | PANTHER:PTHR35280 | ProteinID:CDX84933 | ProteinID:CDX84933.1 |
| SEG:seg | UniParc:UPI0004EE781F | MapMan:35.2 | : | : | : |
Description
BnaC05g21220D
Coordinates
chrLK031839:-:337387..338532
Molecular Weight (calculated)
22304.4 Da
IEP (calculated)
4.676
GRAVY (calculated)
-0.684
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSEDVEVL SRAIEKLLDE KRKREAAGDS FIEDDDDQLL LTKLISQLES PNPIQKTVVT AKDEEGEPSP VSSPSKGKQE DERRLEEIAK DIKEVKRQNK
101: VTHILLSALI ILTLTWQLSE YSMIYMMKER LTHPIRSIGG MFSGVFKGKL LPIKNRLQGT SNDKEENNLH NGSGTNNGVH IQVPDLLREF GFDDDEE
101: VTHILLSALI ILTLTWQLSE YSMIYMMKER LTHPIRSIGG MFSGVFKGKL LPIKNRLQGT SNDKEENNLH NGSGTNNGVH IQVPDLLREF GFDDDEE
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.