Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 9
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25220.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT3G25220.1 | CDY30157 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013225.1-P | Field mustard | endoplasmic reticulum | 100.0 | 100.0 |
| CDY15105 | Canola | endoplasmic reticulum | 100.0 | 99.35 |
| CDY67189 | Canola | endoplasmic reticulum | 97.4 | 97.4 |
| AT3G25220.1 | Thale cress | endoplasmic reticulum | 87.01 | 87.58 |
| VIT_00s0260g00060.t01 | Wine grape | endoplasmic reticulum | 78.57 | 81.76 |
| GSMUA_Achr7P22790_001 | Banana | endoplasmic reticulum | 73.38 | 74.34 |
| CDX85349 | Canola | endoplasmic reticulum | 70.78 | 68.12 |
| CDY05669 | Canola | endoplasmic reticulum, extracellular, golgi | 71.43 | 67.48 |
| CDX86294 | Canola | endoplasmic reticulum | 70.78 | 66.87 |
| CDY51059 | Canola | endoplasmic reticulum | 71.43 | 66.27 |
| CDY62066 | Canola | endoplasmic reticulum | 31.82 | 26.78 |
| CDY13042 | Canola | plastid | 32.47 | 24.15 |
| CDY30419 | Canola | plastid | 26.62 | 18.98 |
| CDY23379 | Canola | plastid | 26.62 | 18.98 |
| CDY42000 | Canola | plastid | 24.03 | 18.5 |
| CDY42648 | Canola | plastid | 23.38 | 18.0 |
| CDY11786 | Canola | cytosol | 23.38 | 13.95 |
| CDX94456 | Canola | nucleus | 29.87 | 12.07 |
| CDX92695 | Canola | nucleus | 32.47 | 11.21 |
| CDY49705 | Canola | nucleus | 32.47 | 10.89 |
| CDX89421 | Canola | nucleus | 31.82 | 10.61 |
| CDY27659 | Canola | plastid | 27.27 | 8.99 |
| CDX99700 | Canola | endoplasmic reticulum, vacuole | 26.62 | 8.25 |
| CDY61640 | Canola | nucleus | 14.94 | 6.22 |
Protein Annotations
| MapMan:18.12.2 | Gene3D:3.10.50.40 | GO:A0A078IMH0 | UniProt:A0A078IMH0 | EnsemblPlants:CDY52280 | ProteinID:CDY52280 |
| ProteinID:CDY52280.1 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00006686001 |
| InterPro:IPR001179 | PFAM:PF00254 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR10516 |
| PANTHER:PTHR10516:SF293 | SUPFAM:SSF54534 | SignalP:SignalP-noTM | UniParc:UPI000254088B | SEG:seg | : |
Description
BnaA03g57730DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078IMH0]
Coordinates
chrLK033075:+:17092..18411
Molecular Weight (calculated)
16233.6 Da
IEP (calculated)
9.702
GRAVY (calculated)
-0.244
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSASSAMK AAGVLVLLAV LTSVYAKKSG DVTELQIGVK FKPKTCDVQA HKGDKIKVHY RGKLTDGTVF DSSFERGDPI EFELGSGQVI PGWDQGLLGA
101: CVGEKRKLKI PSKLGYGDNG SPPKIPGGAT LIFDTELVAV NGKPSGDAKT KNEL
101: CVGEKRKLKI PSKLGYGDNG SPPKIPGGAT LIFDTELVAV NGKPSGDAKT KNEL
001: MMSSASAMKA VGFLLLLTIL TLAYAKKSGD VTELQIGVKY KPQKCDLQAH KGDKIKVHYR GKLTDGTVFD SSFERGDPIE FELGTGQVIP GWDQGLLGAC
101: VGEKRKLKIP SKLGYGDNGS PPKIPGGATL IFDTELVAVN GEPSSEAKSK NEL
101: VGEKRKLKIP SKLGYGDNGS PPKIPGGATL IFDTELVAVN GEPSSEAKSK NEL
Arabidopsis Description
FKBP15-1Peptidyl-prolyl cis-trans isomerase FKBP15-1 [Source:UniProtKB/Swiss-Prot;Acc:Q38935]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.