CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	CDX89318	AT4G26630.1	25387881
AT4G25340.1	CDX94304	AT4G26630.1	25387881
AT4G25340.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89421	Canola	nucleus	94.23	77.71
CDX92695	Canola	nucleus	70.6	60.31
CDY49705	Canola	nucleus	70.87	58.82
AT4G25340.1	Thale cress	nucleus	69.29	55.35
CDX85349	Canola	endoplasmic reticulum	12.86	30.62
CDY62066	Canola	endoplasmic reticulum	14.44	30.05
CDY67189	Canola	endoplasmic reticulum	12.07	29.87
CDY52280	Canola	endoplasmic reticulum	12.07	29.87
CDY15105	Canola	endoplasmic reticulum	12.07	29.68
CDX86294	Canola	endoplasmic reticulum	12.6	29.45
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	12.6	29.45
CDY51059	Canola	endoplasmic reticulum	12.6	28.92
CDY13042	Canola	plastid	14.17	26.09
GSMUA_Achr3P07930_001	Banana	nucleus	41.47	25.44
CDY27659	Canola	plastid	28.08	22.91
CDY11786	Canola	cytosol	14.96	22.09
CDX99700	Canola	endoplasmic reticulum, vacuole	28.61	21.93
CDY61640	Canola	nucleus	19.95	20.54
CDY23379	Canola	plastid	11.29	19.91
CDY30419	Canola	plastid	11.02	19.44
CDY42648	Canola	plastid	9.19	17.5
CDY42000	Canola	plastid	9.19	17.5

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078DZ22	EnsemblPlants:CDX94456	ProteinID:CDX94456	ProteinID:CDX94456.1
ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0018208	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00157626001	InterPro:IPR001179	PFAM:PF00254	PIRSF:PIRSF001473
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534
UniParc:UPI0004EE1746	SEG:seg	:	:	:	:

Description

BnaC01g17280D

Coordinates

chrLK031881:+:1350776..1353247

Molecular Weight (calculated)

42567.8 Da

IEP (calculated)

4.707

GRAVY (calculated)

-1.342

Length

381 amino acids

Sequence
(BLAST)

001: MTVEFSVTGD RSIHLTGFLE EYDDEEEYEQ DEDDSDGMEI AEMGSEESSD YDSEEDEDDM DEDQMDKFED FLDRNLEMYR QSSVPNSGVV IEEIEEEPAE
101: DKKTKRSKKK SQAAKDKNAN KQIVVKESAH ASDLESEDED GFPIPKENNN SGEKMNSDVD EQGSNKKRKA KASEQDGGQE SENKNKKKKN QKEKKKGEST
201: SNEKVETDSV LKKKETTQTS SNQKAQNETK NNAMSQSSKT PDKSAEKKNK QKNTSEKATV ENSRASQEQT YPNGLVVEEL KLGKPNGKQA TPGKQVSVRY
301: IGKLQKNGKI FDSNIGKAPF KFKLGRGEVI KGWDVGVNGM RVGEKRKLTI PPSMGYGSRG AGGQIPPNAW LSFEVELIDV K

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.