CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43560.1	CDY32970	AT5G42980.1	15352244
AT2G43560.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037701.1-P	Field mustard	plastid	100.0	100.0
CDY23379	Canola	plastid	97.69	97.69
AT2G43560.1	Thale cress	plastid	88.89	86.1
VIT_05s0094g00100.t01	Wine grape	plastid	72.69	67.97
KRH24569	Soybean	plastid	71.3	66.38
KRH29576	Soybean	plastid	70.37	65.52
Solyc04g015040.2.1	Tomato	plastid	68.52	62.98
PGSC0003DMT400038848	Potato	plastid	67.59	62.13
Zm00001d031696_P002	Maize	plastid	67.13	61.97
GSMUA_Achr7P23820_001	Banana	plastid	65.28	59.75
EES15264	Sorghum	plastid	66.2	59.09
TraesCS7D01G268300.1	Wheat	plastid	63.89	58.72
Os08t0541400-01	Rice	plastid	64.81	53.64
TraesCS7A01G266500.2	Wheat	plastid	54.63	44.03
TraesCS7B01G166000.2	Wheat	plastid	52.78	43.02
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	52.78	35.29
CDY62066	Canola	endoplasmic reticulum	25.0	29.51
CDY13042	Canola	plastid	25.93	27.05
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	20.37	26.99
CDY67189	Canola	endoplasmic reticulum	18.98	26.62
CDY52280	Canola	endoplasmic reticulum	18.98	26.62
CDY51059	Canola	endoplasmic reticulum	20.37	26.51
CDY15105	Canola	endoplasmic reticulum	18.98	26.45
CDX85349	Canola	endoplasmic reticulum	19.44	26.25
CDX86294	Canola	endoplasmic reticulum	19.44	25.77
CDY42648	Canola	plastid	18.98	20.5
CDY42000	Canola	plastid	18.98	20.5
CDY11786	Canola	cytosol	16.2	13.57
CDX94456	Canola	nucleus	19.44	11.02
CDX92695	Canola	nucleus	22.22	10.76
CDY49705	Canola	nucleus	22.22	10.46
CDX89421	Canola	nucleus	21.76	10.17
CDY27659	Canola	plastid	20.83	9.64
CDX99700	Canola	endoplasmic reticulum, vacuole	21.3	9.26
CDY61640	Canola	nucleus	12.5	7.3

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078GZ50	UniProt:A0A078GZ50	EnsemblPlants:CDY30419	ProteinID:CDY30419
ProteinID:CDY30419.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00045118001
InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811
PANTHER:PTHR43811:SF17	SUPFAM:SSF54534	UniParc:UPI0002543CA9	SEG:seg	:	:

Description

BnaA04g25200DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078GZ50]

Coordinates

chrLK032253:-:210904..212728

Molecular Weight (calculated)

22872.8 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.125

Length

216 amino acids

Sequence
(BLAST)

001: MAASSSPSLL LPLGSASRNG PTMKTPRCIS TRAITASETR NKSCSRRDAM LLVLGVSGLS MSYLPAAYAA GLPPEDKPRL CEAECEKELE NVPMVTTESG
101: LQYKDIKVGK GPSPPVGYQV AANYVAMVPS GQIFDSSLEK GLPYLFRVGS GQVIKGLDEG LLTMKAGGKR RLYIPGPLAF PKGLVSAPGR PRVAPNSPVV
201: FDVSLEYIPG LESDEE

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.