CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25220.1	CDX97739	AT3G16310.1	21798944
AT3G25220.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013225.1-P	Field mustard	endoplasmic reticulum	97.4	97.4
CDY52280	Canola	endoplasmic reticulum	97.4	97.4
CDY15105	Canola	endoplasmic reticulum	97.4	96.77
AT3G25220.1	Thale cress	endoplasmic reticulum	87.66	88.24
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	78.57	81.76
GSMUA_Achr7P22790_001	Banana	endoplasmic reticulum	72.73	73.68
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	71.43	67.48
CDX85349	Canola	endoplasmic reticulum	69.48	66.88
CDY51059	Canola	endoplasmic reticulum	71.43	66.27
CDX86294	Canola	endoplasmic reticulum	69.48	65.64
CDY62066	Canola	endoplasmic reticulum	31.82	26.78
CDY13042	Canola	plastid	32.47	24.15
CDY42000	Canola	plastid	24.68	19.0
CDY30419	Canola	plastid	26.62	18.98
CDY23379	Canola	plastid	26.62	18.98
CDY42648	Canola	plastid	24.03	18.5
CDY11786	Canola	cytosol	23.38	13.95
CDX94456	Canola	nucleus	29.87	12.07
CDX92695	Canola	nucleus	32.47	11.21
CDY49705	Canola	nucleus	32.47	10.89
CDX89421	Canola	nucleus	31.82	10.61
CDY27659	Canola	plastid	27.27	8.99
CDX99700	Canola	endoplasmic reticulum, vacuole	26.62	8.25
CDY61640	Canola	nucleus	14.94	6.22

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078JK66	UniProt:A0A078JK66	EnsemblPlants:CDY67189	ProteinID:CDY67189
ProteinID:CDY67189.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00059727001
InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF293	SUPFAM:SSF54534	SignalP:SignalP-noTM	UniParc:UPI0004EC8884	SEG:seg	:

Description

BnaC03g74260DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078JK66]

Coordinates

chrLK035845:+:8782..10380

Molecular Weight (calculated)

16235.6 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.276

Length

154 amino acids

Sequence
(BLAST)

001: MRSSASSAMK AAGVLVLLAV LTSVYAKKSG DVTELQIGVK FKPKTCDAQA HKGDKIKVHY RGKLTDGTVF DSSFERGDPI EFELGSGQVI PGWDQGLLGA
101: CVGEKRKLKI PSKLGYGDNG SPPKIPGGAT LIFDTELVAV NGKPSSEGKT KNEL

Best Arabidopsis Sequence Match ( AT3G25220.1 )
(BLAST)

001: MMSSASAMKA VGFLLLLTIL TLAYAKKSGD VTELQIGVKY KPQKCDLQAH KGDKIKVHYR GKLTDGTVFD SSFERGDPIE FELGTGQVIP GWDQGLLGAC
101: VGEKRKLKIP SKLGYGDNGS PPKIPGGATL IFDTELVAVN GEPSSEAKSK NEL

Arabidopsis Description

FKBP15-1Peptidyl-prolyl cis-trans isomerase FKBP15-1 [Source:UniProtKB/Swiss-Prot;Acc:Q38935]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.