CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017596.1-P	Field mustard	plastid	100.0	100.0
CDY62066	Canola	endoplasmic reticulum	81.64	92.35
AT5G45680.1	Thale cress	plastid	90.34	89.9
VIT_01s0011g00930.t01	Wine grape	plastid	66.67	63.89
KRH42434	Soybean	plastid	58.45	56.02
PGSC0003DMT400067618	Potato	cytosol, plastid	60.39	55.31
GSMUA_Achr8P06890_001	Banana	plastid	54.59	50.45
Zm00001d046940_P001	Maize	plastid	50.72	49.3
Os06t0663800-01	Rice	extracellular	51.21	48.62
TraesCS7B01G388800.1	Wheat	plastid	47.34	48.28
TraesCS7D01G472600.1	Wheat	plastid	46.86	47.78
TraesCS7A01G485300.1	Wheat	plastid	46.86	47.78
Solyc08g006540.2.1	Tomato	plastid	59.9	47.15
HORVU7Hr1G109380.4	Barley	plastid	45.89	43.98
OQU76834	Sorghum	mitochondrion, plastid	50.24	36.62
CDX85349	Canola	endoplasmic reticulum	25.12	32.5
CDY67189	Canola	endoplasmic reticulum	24.15	32.47
CDY52280	Canola	endoplasmic reticulum	24.15	32.47
CDY15105	Canola	endoplasmic reticulum	24.15	32.26
CDY05669	Canola	endoplasmic reticulum, extracellular, golgi	25.12	31.9
CDX86294	Canola	endoplasmic reticulum	24.64	31.29
CDY51059	Canola	endoplasmic reticulum	24.64	30.72
CDY42648	Canola	plastid	28.99	30.0
CDY42000	Canola	plastid	28.99	30.0
CDY30419	Canola	plastid	27.05	25.93
CDY23379	Canola	plastid	27.05	25.93
CDY11786	Canola	cytosol	20.77	16.67
CDX94456	Canola	nucleus	26.09	14.17
CDX92695	Canola	nucleus	29.47	13.68
CDX89421	Canola	nucleus	29.95	13.42
CDY49705	Canola	nucleus	28.99	13.07
CDY27659	Canola	plastid	25.6	11.35
CDX99700	Canola	endoplasmic reticulum, vacuole	25.12	10.46
CDY61640	Canola	nucleus	16.43	9.19

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078FJB3	UniProt:A0A078FJB3	EnsemblPlants:CDY13042	ProteinID:CDY13042
ProteinID:CDY13042.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00070861001
InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI000254259B	:	:	:

Description

BnaA09g17750DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078FJB3]

Coordinates

chrLK032031:-:13044..14412

Molecular Weight (calculated)

21742.2 Da

IEP (calculated)

8.750

GRAVY (calculated)

0.038

Length

207 amino acids

Sequence
(BLAST)

001: MSSLGFSVGT CSPPSEQRKC RSFVSSSLNK AEAINLRSKQ KISDHELSFV QPASCGRREA IIGFGFCIGL VDNVSALAET SSCEFSVSPS GLAFCDKVVG
101: YGPAAVKGQL IKAHYVGKLE NGKVFDSSYN RGKPLTFRIG VGEVIKGWDQ GIIGSDGVPA MLTGGKRTLK IPPELAYGDR GAGCKGGSCL IPPASVLLFD
201: IEFIGKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.