Factsheet for Solyc08g006540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
vacuole 3
extracellular 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067618	Potato	cytosol, plastid	83.27	96.9
CDY62066	Canola	endoplasmic reticulum	44.49	63.93
AT5G45680.1	Thale cress	plastid	48.29	61.06
Bra017596.1-P	Field mustard	plastid	47.15	59.9
CDY13042	Canola	plastid	47.15	59.9
KRH42434	Soybean	plastid	49.05	59.72
VIT_01s0011g00930.t01	Wine grape	plastid	49.05	59.72
TraesCS7D01G472600.1	Wheat	plastid	38.4	49.75
TraesCS7B01G388800.1	Wheat	plastid	38.4	49.75
TraesCS7A01G485300.1	Wheat	plastid	38.02	49.26
GSMUA_Achr8P06890_001	Banana	plastid	41.44	48.66
Zm00001d046940_P001	Maize	plastid	39.16	48.36
Os06t0663800-01	Rice	extracellular	39.16	47.25
HORVU7Hr1G109380.4	Barley	plastid	37.26	45.37
Solyc04g054520.2.1	Tomato	nucleus	30.8	38.76
OQU76834	Sorghum	mitochondrion, plastid	39.92	36.97
Solyc09g057670.2.1	Tomato	extracellular	20.91	36.91
Solyc04g015040.2.1	Tomato	plastid	21.67	24.26
Solyc03g007170.2.1	Tomato	nucleus	22.81	12.5
Solyc01g091340.2.1	Tomato	nucleus	22.05	10.53
Solyc02g005290.2.1	Tomato	nucleus	18.63	9.46

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	GO:GO:0061077	InterPro:IPR001179
UniProt:K4CIE2	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc08g006540.2	EnsemblPlants:Solyc08g006540.2.1	UniParc:UPI000276C047	SEG:seg

Description

Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G45680) UniProtKB/Swiss-Prot;Acc:Q9SCY2]

Coordinates

chr8:-:1149517..1154147

Molecular Weight (calculated)

28139.5 Da

IEP (calculated)

9.081

GRAVY (calculated)

0.111

Length

263 amino acids

Sequence
(BLAST)

001: MKPIRGKIFI GGNKFTSLLH LCPLSFLSVL KILCLVEMNS IPFSIVTYIP SKQPLLHCTK TSQTTTDPIP HFIKSSILSS SSKSVNKLAE KISPLPSSFS
101: RRETLSACGL GFSAVLFEAL LQPQSNIEAI AEEAAATECE FTVTPSGLAY CDKAVGYGPE AVKGQLIKAH YVGKLENGKV FDSSYNRGKP LTFRVGVGEV
201: IKGWDQGILG GDGFPPMLTG GKRKLKIPPE LGYGIRGAGC RGGTCIIPPD SVLLFDVEFV GKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.