Factsheet for VIT_01s0011g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62066	Canola	endoplasmic reticulum	58.33	68.85
Bra017596.1-P	Field mustard	plastid	63.89	66.67
CDY13042	Canola	plastid	63.89	66.67
AT5G45680.1	Thale cress	plastid	62.96	65.38
KRH42434	Soybean	plastid	58.8	58.8
PGSC0003DMT400067618	Potato	cytosol, plastid	61.11	58.41
GSMUA_Achr8P06890_001	Banana	plastid	53.7	51.79
Zm00001d046940_P001	Maize	plastid	50.93	51.64
Os06t0663800-01	Rice	extracellular	49.54	49.08
Solyc08g006540.2.1	Tomato	plastid	59.72	49.05
TraesCS7B01G388800.1	Wheat	plastid	45.83	48.77
TraesCS7A01G485300.1	Wheat	plastid	45.37	48.28
TraesCS7D01G472600.1	Wheat	plastid	44.91	47.78
HORVU7Hr1G109380.4	Barley	plastid	44.91	44.91
OQU76834	Sorghum	mitochondrion, plastid	50.46	38.38
VIT_07s0031g01150.t01	Wine grape	plastid	36.11	37.86
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	22.69	33.11
VIT_05s0094g00100.t01	Wine grape	plastid	26.85	25.11
VIT_16s0022g01760.t01	Wine grape	nucleus	27.78	11.43
VIT_19s0093g00480.t01	Wine grape	nucleus	29.17	11.35

Protein Annotations

EntrezGene:100262788	wikigene:100262788	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:CBI27246	ProteinID:CBI27246.3
UniProt:D7T9S4	EMBL:FN595752	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	GO:GO:0061077	InterPro:IPR001179
EntrezGene:LOC100262788	wikigene:LOC100262788	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	TIGR:TC62198	UniParc:UPI00015C802D	ArrayExpress:VIT_01s0011g00930
EnsemblPlantsGene:VIT_01s0011g00930	EnsemblPlants:VIT_01s0011g00930.t01	unigene:Vvi.77	RefSeq:XP_002272628	RefSeq:XP_002272628.1	SEG:seg

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7T9S4]

Coordinates

chr1:+:793778..796517

Molecular Weight (calculated)

22885.7 Da

IEP (calculated)

8.371

GRAVY (calculated)

0.068

Length

216 amino acids

Sequence
(BLAST)

001: MSSLAFSLGY CTPIKLRTSS GRLFASNVNI VAESRIKILS HHQESSSPRP LQINENSPLF GRREAIGFGF CFSILDVFLQ AQPSVAAQTA PCELTVAPSG
101: LAFCDKVVGT GPEAVEGQLI KAHYVGKLES GKVFDSSYDR GKPLTFRIGV GEVIRGWDQG ILGGDGVPPM LAGGKRTLKL PPELGYGTRG AGCRGGSCII
201: PPDSVLLFDV EFIGKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.