Factsheet for Bra017596.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13042	Canola	plastid	100.0	100.0
CDY62066	Canola	endoplasmic reticulum	81.64	92.35
AT5G45680.1	Thale cress	plastid	90.34	89.9
VIT_01s0011g00930.t01	Wine grape	plastid	66.67	63.89
KRH42434	Soybean	plastid	58.45	56.02
PGSC0003DMT400067618	Potato	cytosol, plastid	60.39	55.31
GSMUA_Achr8P06890_001	Banana	plastid	54.59	50.45
Zm00001d046940_P001	Maize	plastid	50.72	49.3
Os06t0663800-01	Rice	extracellular	51.21	48.62
TraesCS7B01G388800.1	Wheat	plastid	47.34	48.28
TraesCS7A01G485300.1	Wheat	plastid	46.86	47.78
TraesCS7D01G472600.1	Wheat	plastid	46.86	47.78
Solyc08g006540.2.1	Tomato	plastid	59.9	47.15
HORVU7Hr1G109380.4	Barley	plastid	45.89	43.98
OQU76834	Sorghum	mitochondrion, plastid	50.24	36.62
Bra013225.1-P	Field mustard	endoplasmic reticulum	24.15	32.47
Bra037476.1-P	Field mustard	endoplasmic reticulum	24.64	31.29
Bra011839.1-P	Field mustard	plastid	28.99	30.0
Bra020690.1-P	Field mustard	endoplasmic reticulum	24.15	29.94
Bra037701.1-P	Field mustard	plastid	27.05	25.93
Bra013887.1-P	Field mustard	nucleus	29.95	13.45
Bra019172.1-P	Field mustard	nucleus	28.99	13.07
Bra025447.1-P	Field mustard	plastid	25.12	11.21

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra017596	EnsemblPlants:Bra017596.1	EnsemblPlants:Bra017596.1-P	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	InterPro:IPR001179
UniProt:M4DM64	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI000254259B	:	:	:

Description

AT5G45680 (E=3e-106) ATFKBP13, FKBP13 | FK506-binding protein 1 (FKBP13)

Coordinates

chrA09:-:16782689..16783814

Molecular Weight (calculated)

21742.2 Da

IEP (calculated)

8.750

GRAVY (calculated)

0.038

Length

207 amino acids

Sequence
(BLAST)

001: MSSLGFSVGT CSPPSEQRKC RSFVSSSLNK AEAINLRSKQ KISDHELSFV QPASCGRREA IIGFGFCIGL VDNVSALAET SSCEFSVSPS GLAFCDKVVG
101: YGPAAVKGQL IKAHYVGKLE NGKVFDSSYN RGKPLTFRIG VGEVIKGWDQ GIIGSDGVPA MLTGGKRTLK IPPELAYGDR GAGCKGGSCL IPPASVLLFD
201: IEFIGKA

Best Arabidopsis Sequence Match ( AT5G45680.1 )
(BLAST)

001: MSSLGFSVGT CSPPSEKRKC RFLVNNSLNK AEAINLRNKQ KVSSDPELSF AQLSSCGRRE AIIGFGFSIG LLDNVSALAE TTSCEFSVSP SGLAFCDKVV
101: GYGPEAVKGQ LIKAHYVGKL ENGKVFDSSY NRGKPLTFRI GVGEVIKGWD QGILGSDGIP PMLTGGKRTL RIPPELAYGD RGAGCKGGSC LIPPASVLLF
201: DIEYIGKA

Arabidopsis Description

FKBP13Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.