Factsheet for Bra011839.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000837.1-P
Bra034200.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	Bra000837.1-P	AT4G03280.1	12424338
AT4G39710.1	Bra034200.1-P	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42000	Canola	plastid	100.0	100.0
CDY42648	Canola	plastid	96.5	96.5
AT4G39710.1	Thale cress	plastid	85.0	78.34
VIT_07s0031g01150.t01	Wine grape	plastid	60.5	58.74
KRH43236	Soybean	nucleus	57.5	55.02
KRH59400	Soybean	extracellular, vacuole	43.0	54.43
Solyc04g054520.2.1	Tomato	nucleus	54.5	52.15
PGSC0003DMT400056671	Potato	plastid	54.0	51.67
KXG30740	Sorghum	plastid	56.5	50.0
GSMUA_Achr5P24380_001	Banana	plastid	56.5	48.29
Zm00001d018077_P002	Maize	plastid	54.0	47.79
TraesCS6D01G282000.1	Wheat	plastid	53.0	47.75
TraesCS6B01G331700.1	Wheat	plastid	52.5	47.51
TraesCS6A01G302500.1	Wheat	plastid	52.5	47.3
Os02t0751600-01	Rice	plastid	54.0	46.96
HORVU6Hr1G075080.2	Barley	plastid	52.5	44.49
Bra017596.1-P	Field mustard	plastid	30.0	28.99
Bra013225.1-P	Field mustard	endoplasmic reticulum	18.5	24.03
Bra037476.1-P	Field mustard	endoplasmic reticulum	18.5	22.7
Bra020690.1-P	Field mustard	endoplasmic reticulum	17.5	20.96
Bra037701.1-P	Field mustard	plastid	20.5	18.98
Bra019172.1-P	Field mustard	nucleus	23.0	10.02
Bra025447.1-P	Field mustard	plastid	22.0	9.48
Bra013887.1-P	Field mustard	nucleus	21.0	9.11

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra011839	EnsemblPlants:Bra011839.1	EnsemblPlants:Bra011839.1-P	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	UniProt:M4D5T2	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0002546060	SEG:seg	:

Description

AT4G39710 (E=5e-047) | immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative

Coordinates

chrA01:-:278908..280177

Molecular Weight (calculated)

21248.2 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.077

Length

200 amino acids

Sequence
(BLAST)

001: MAISTLTLTS SHYTSSFRPT ICSSSSSSSS SFSCLCSSSS STDGQQKQRS LTGAKKNVFG VGLGLLAATI LSITPLDADA TRIEYYATVG DPLCEYSYAK
101: SGLGFCDIAV GFGDKAPRGV LVNVHYTARF ADGTLFDSTY KRARPLTMRI GGKRKLQIPP KLAYGPEPAG CFSGDCNIPG NATLLYDINF VEIYPGSNTR

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.