CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19551

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	EES19551	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018077_P002	Maize	plastid	88.5	88.5
TraesCS6D01G282000.1	Wheat	plastid	77.88	79.28
TraesCS6A01G302500.1	Wheat	plastid	77.43	78.83
TraesCS6B01G331700.1	Wheat	plastid	76.11	77.83
Os02t0751600-01	Rice	plastid	77.88	76.52
HORVU6Hr1G075080.2	Barley	plastid	76.99	73.73
VIT_07s0031g01150.t01	Wine grape	plastid	55.75	61.16
GSMUA_Achr5P24380_001	Banana	plastid	62.39	60.26
AT4G39710.1	Thale cress	plastid	57.52	59.91
Bra011839.1-P	Field mustard	plastid	50.0	56.5
CDY42648	Canola	plastid	50.0	56.5
CDY42000	Canola	plastid	50.0	56.5
KRH43236	Soybean	nucleus	50.44	54.55
PGSC0003DMT400056671	Potato	plastid	48.67	52.63
Solyc04g054520.2.1	Tomato	nucleus	48.67	52.63
KRH59400	Soybean	extracellular, vacuole	35.4	50.63
OQU76834	Sorghum	mitochondrion, plastid	38.94	30.99
EER99137	Sorghum	endoplasmic reticulum	20.35	30.87
EES04100	Sorghum	endoplasmic reticulum	20.8	30.32
EES15264	Sorghum	plastid	26.55	24.79
EES10880	Sorghum	nucleus	22.57	10.2
KXG35300	Sorghum	nucleus	19.91	10.09

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A194YSD6	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179
EnsemblPlants:KXG30740	ProteinID:KXG30740	ProteinID:KXG30740.1	ProteinID:KXG30741.1	ProteinID:OQU85413.1	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	EnsemblPlantsGene:SORBI_3004G234200
SUPFAM:SSF54534	UniParc:UPI0002207233	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:58252479..58255024

Molecular Weight (calculated)

22949.7 Da

IEP (calculated)

9.384

GRAVY (calculated)

0.149

Length

226 amino acids

Sequence
(BLAST)

001: MAPPISSLSS LVASSQIPTP LLPRPSSRAL AVAPCSSASS ASSSSASPST SSAPPRHAAA GRRGLLALGA GFLASAALLI PAGDAGATRV EYYATVGDKL
101: CDLSLVKSGL AYCDVEVGTG VQPPRGELIN VHYTARFPDG TLFDSSYKRG RPLTMRIGAG KILRGLEQGI SGGGGVPPML VGGKRKLMIP ASLGYGPEPA
201: GCFSGDCNIP GNATLLYDLY LVGIYK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.