Factsheet for TraesCS6D01G282000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G207900.1
TraesCS2B01G234500.1
TraesCS2D01G214700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	TraesCS2A01G207900.1	AT4G03280.1	12424338
AT4G39710.1	TraesCS2B01G234500.1	AT4G03280.1	12424338
AT4G39710.1	TraesCS2D01G214700.1	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G302500.1	Wheat	plastid	98.65	98.65
TraesCS6B01G331700.1	Wheat	plastid	97.3	97.74
HORVU6Hr1G075080.2	Barley	plastid	97.3	91.53
Zm00001d018077_P002	Maize	plastid	80.18	78.76
KXG30740	Sorghum	plastid	79.28	77.88
Os02t0751600-01	Rice	plastid	77.93	75.22
GSMUA_Achr5P24380_001	Banana	plastid	65.77	62.39
VIT_07s0031g01150.t01	Wine grape	plastid	57.21	61.65
AT4G39710.1	Thale cress	plastid	56.76	58.06
CDY42648	Canola	plastid	48.2	53.5
Bra011839.1-P	Field mustard	plastid	47.75	53.0
CDY42000	Canola	plastid	47.75	53.0
KRH43236	Soybean	nucleus	49.55	52.63
Solyc04g054520.2.1	Tomato	nucleus	48.65	51.67
PGSC0003DMT400056671	Potato	plastid	48.65	51.67
KRH59400	Soybean	extracellular, vacuole	34.68	48.73
TraesCS7D01G472600.1	Wheat	plastid	34.68	37.93
TraesCS5D01G286500.1	Wheat	golgi	19.37	28.29
TraesCS3D01G417400.1	Wheat	endoplasmic reticulum, extracellular, golgi	18.47	26.28
TraesCS7D01G268300.1	Wheat	plastid	22.97	21.7
TraesCS5D01G164000.1	Wheat	nucleus	20.72	10.62
TraesCS2D01G313000.1	Wheat	nucleus	21.17	9.65

Protein Annotations

EnsemblPlants:TraesCS6D01G282000.1	EnsemblPlantsGene:TraesCS6D01G282000	Gene3D:3.10.50.40	InterPro:IPR001179	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	PFAM:PF00254	PFscan:PS50059	SEG:seg	SUPFAM:SSF54534
MapMan:1.1.8.1.4.4	MapMan:18.12.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:389597287..389598466

Molecular Weight (calculated)

22490.4 Da

IEP (calculated)

9.250

GRAVY (calculated)

0.133

Length

222 amino acids

Sequence
(BLAST)

001: MPPPISPLPL MASSPIPSPP AARPGSGRAL AAVAPCNSSA SPSPSTSTSS VAPASGGRRG VLALGAGFLA SAALLCPAGD AGATRIEYFA TVGDKLCDMD
101: FAKSGLGYCD VEVGTGVQPK RGELINIHYT ARFPDGTVFD SSYKRGRPLT MRIGAGKILR GLQQGIGGGG GVTPMLVGGK RKLMIPPILA YGPEPAGCFS
201: GDCNIPGNST ILYDILLVGI YK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.