Factsheet for HORVU6Hr1G075080.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G041610.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	HORVU2Hr1G041610.3	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G282000.1	Wheat	plastid	91.53	97.3
TraesCS6A01G302500.1	Wheat	plastid	91.1	96.85
TraesCS6B01G331700.1	Wheat	plastid	90.68	96.83
Zm00001d018077_P002	Maize	plastid	74.58	77.88
KXG30740	Sorghum	plastid	73.73	76.99
Os02t0751600-01	Rice	plastid	72.46	74.35
VIT_07s0031g01150.t01	Wine grape	plastid	53.81	61.65
GSMUA_Achr5P24380_001	Banana	plastid	61.02	61.54
AT4G39710.1	Thale cress	plastid	52.97	57.6
KRH43236	Soybean	nucleus	47.46	53.59
CDY42648	Canola	plastid	44.92	53.0
Bra011839.1-P	Field mustard	plastid	44.49	52.5
CDY42000	Canola	plastid	44.49	52.5
PGSC0003DMT400056671	Potato	plastid	45.76	51.67
Solyc04g054520.2.1	Tomato	nucleus	45.76	51.67
KRH59400	Soybean	extracellular, vacuole	33.05	49.37
HORVU7Hr1G109380.4	Barley	plastid	32.2	35.19
HORVU5Hr1G075490.3	Barley	endoplasmic reticulum, extracellular, golgi	18.22	27.92
HORVU3Hr1G093290.1	Barley	endoplasmic reticulum	17.37	26.11
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	19.07	13.93
HORVU2Hr1G078350.3	Barley	nucleus	20.34	9.74
HORVU5Hr1G049560.12	Barley	nucleus	18.64	9.52
HORVU6Hr1G023790.2	Barley	cytosol, nucleus	9.32	8.06

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A287UQJ1	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G075080
EnsemblPlants:HORVU6Hr1G075080.2	InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI000B4618E2	SEG:seg	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A287UQJ1]

Coordinates

chrchr6H:-:517959736..517961515

Molecular Weight (calculated)

23899.2 Da

IEP (calculated)

8.919

GRAVY (calculated)

0.203

Length

236 amino acids

Sequence
(BLAST)

001: ACPRAACSHS LEIIIMPPPI SPLPLMASSP IPSPPAARPG SGRAIAAVAP CNSSASPSPS TSASSAAAAG GRRGVLALGA GFLASAALLC PAGDAGATRI
101: EYFATVGEKL CDMDFAKSGL GYCDVEVGTG VQPKRGELIN IHYTARFPDG TVFDSSYKRG RPLTMRIGAG KILRGLQQGI GGGGGVTPML VGGKRKLMIP
201: PILAYGPEPA GCFSGDCNIP GNSTILYDIL LVGIYK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.