Factsheet for PGSC0003DMT400056671

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	PGSC0003DMT400035747	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054520.2.1	Tomato	nucleus	98.56	98.56
VIT_07s0031g01150.t01	Wine grape	plastid	66.51	67.48
KRH59400	Soybean	extracellular, vacuole	49.28	65.19
KRH43236	Soybean	nucleus	62.2	62.2
AT4G39710.1	Thale cress	plastid	62.68	60.37
GSMUA_Achr5P24380_001	Banana	plastid	62.2	55.56
CDY42648	Canola	plastid	52.15	54.5
Bra011839.1-P	Field mustard	plastid	51.67	54.0
CDY42000	Canola	plastid	51.67	54.0
Os02t0751600-01	Rice	plastid	55.5	50.43
Zm00001d018077_P002	Maize	plastid	53.11	49.12
KXG30740	Sorghum	plastid	52.63	48.67
TraesCS6A01G302500.1	Wheat	plastid	51.67	48.65
TraesCS6D01G282000.1	Wheat	plastid	51.67	48.65
TraesCS6B01G331700.1	Wheat	plastid	51.2	48.42
HORVU6Hr1G075080.2	Barley	plastid	51.67	45.76
PGSC0003DMT400067618	Potato	cytosol, plastid	38.28	35.4
PGSC0003DMT400022512	Potato	extracellular	22.49	31.54
PGSC0003DMT400038848	Potato	plastid	23.92	21.28
PGSC0003DMT400079626	Potato	nucleus	24.88	10.72
PGSC0003DMT400033263	Potato	nucleus	24.88	9.42
PGSC0003DMT400037664	Potato	mitochondrion	6.7	5.0

Protein Annotations

MapMan:1.1.8.1.4.4	EntrezGene:102582493	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179
UniProt:M1BZS1	PFAM:PF00254	EnsemblPlantsGene:PGSC0003DMG400022039	PGSC:PGSC0003DMG400022039	EnsemblPlants:PGSC0003DMT400056671	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI000295B1A6
RefSeq:XP_006363941.1	RefSeq:XP_015159182.1	:	:	:	:

Description

FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400022039]

Coordinates

chr4:+:52436292..52445062

Molecular Weight (calculated)

22396.1 Da

IEP (calculated)

8.849

GRAVY (calculated)

0.005

Length

209 amino acids

Sequence
(BLAST)

001: MAVSSLSFTL PKLQTFTPKP TIAATFKASS SHESTPFINQ KQIFQMGVGI LAASIVASAP LNADATRIEY YATTAEPTCE FNFVRSGLGY CDIAVGSGEE
101: APYNKLVNIH YTARFADGIV FDSSYKRGRA LTMRLGMGKV IKGLDQGILG GEGVPPMLVG GKRKLQIPPH LAYGPEPAGC FSGDCNIPGN ATLVYDIKFV
201: ELYSGNRKM

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.