Factsheet for Zm00001d018077_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016134_P002
Zm00001d053432_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	Zm00001d016134_P002	AT4G03280.1	12424338
AT4G39710.1	Zm00001d053432_P001	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30740	Sorghum	plastid	88.5	88.5
TraesCS6A01G302500.1	Wheat	plastid	79.65	81.08
TraesCS6D01G282000.1	Wheat	plastid	78.76	80.18
TraesCS6B01G331700.1	Wheat	plastid	76.55	78.28
Os02t0751600-01	Rice	plastid	78.76	77.39
HORVU6Hr1G075080.2	Barley	plastid	77.88	74.58
VIT_07s0031g01150.t01	Wine grape	plastid	56.19	61.65
GSMUA_Achr5P24380_001	Banana	plastid	61.95	59.83
AT4G39710.1	Thale cress	plastid	54.87	57.14
KRH43236	Soybean	nucleus	50.44	54.55
CDY42648	Canola	plastid	48.23	54.5
Bra011839.1-P	Field mustard	plastid	47.79	54.0
CDY42000	Canola	plastid	47.79	54.0
Solyc04g054520.2.1	Tomato	nucleus	49.12	53.11
PGSC0003DMT400056671	Potato	plastid	49.12	53.11
KRH59400	Soybean	extracellular, vacuole	35.84	51.27
Zm00001d046940_P001	Maize	plastid	39.38	41.78
Zm00001d042372_P002	Maize	endoplasmic reticulum, extracellular, golgi	19.03	27.74
Zm00001d021021_P001	Maize	endoplasmic reticulum	19.91	27.61
Zm00001d031696_P002	Maize	plastid	26.11	25.21
Zm00001d012064_P001	Maize	endoplasmic reticulum, extracellular, golgi	18.58	22.58
Zm00001d003535_P001	Maize	nucleus	10.18	16.43
Zm00001d019987_P001	Maize	cytosol	21.24	10.81
Zm00001d025522_P001	Maize	plasma membrane	22.12	10.1
Zm00001d005534_P001	Maize	nucleus	15.49	9.38

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:AQK74974.1	ProteinID:AQK74975.1	EMBL:BT086579
UniProt:C4J6Y2	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020
GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0001A4BBD7	EnsemblPlantsGene:Zm00001d018077
EnsemblPlants:Zm00001d018077_P002	EnsemblPlants:Zm00001d018077_T002	SEG:seg	:	:	:

Description

Photosynthetic NDH subunit of lumenal location 4 chloroplastic

Coordinates

chr5:+:213824475..213826162

Molecular Weight (calculated)

22909.8 Da

IEP (calculated)

9.186

GRAVY (calculated)

0.117

Length

226 amino acids

Sequence
(BLAST)

001: MAPPITSLSS LMASSPIPTP PPPLPKTSGR ALSVAPCGSA SSSSPSTSST PHPVAASASA GRRGLLALGA GFLASAALLS PAGDAGATRI EYYATVGDKM
101: CDLSLVKSGL AYCDVEVGTG VQPPRGELIN VHYTARFPDG TLFDSSYKRG RPLTMRIGAG KILRGLEQGI SGGGGVPPML VGGKRKLMIP ASLAYGPEPA
201: GCFSGDCNIP GNSTLLYDLF LVGIYK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.