Factsheet for Zm00001d053432_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018077_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	Zm00001d018077_P002	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19551	Sorghum	plastid	95.15	95.58
Zm00001d016134_P002	Maize	plastid	94.71	95.13
Os07t0556200-01	Rice	plastid	85.9	86.67
TraesCS2A01G207900.1	Wheat	plastid	82.82	84.68
TraesCS2D01G214700.1	Wheat	plastid	82.38	84.23
TraesCS2B01G234500.1	Wheat	plastid	82.38	84.23
VIT_03s0017g00940.t01	Wine grape	mitochondrion	65.2	76.29
HORVU2Hr1G041610.3	Barley	plastid	77.53	76.19
GSMUA_Achr9P24590_001	Banana	plastid	74.45	74.12
Solyc12g005630.1.1	Tomato	plastid	72.69	71.43
VIT_19s0014g03850.t01	Wine grape	plastid	71.37	71.05
PGSC0003DMT400035747	Potato	plastid	71.81	70.87
KRH26877	Soybean	plastid	70.04	70.04
AT4G03280.1	Thale cress	plastid	70.04	69.43
KRH22477	Soybean	nucleus, plastid	69.16	69.16
CDY17951	Canola	plastid	70.04	68.83
CDX90891	Canola	plastid	70.04	68.83
Bra000837.1-P	Field mustard	plastid	70.04	68.83
VIT_12s0134g00510.t01	Wine grape	plastid	67.84	68.14
CDY22118	Canola	plastid	69.16	67.97
Bra034200.1-P	Field mustard	plastid	69.16	67.97
GSMUA_Achr10P...	Banana	plastid	63.88	67.44
CDY21952	Canola	plastid	68.28	67.1

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	EntrezGene:100273026	Gene3D:2.102.10.10	ProteinID:AQK59453.1
UniProt:B4FSD8	EMBL:BT040026	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	EMBL:EU972601	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651
GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	HAMAP:MF_01335
PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix
UniParc:UPI00017B8276	EnsemblPlantsGene:Zm00001d053432	EnsemblPlants:Zm00001d053432_P001	EnsemblPlants:Zm00001d053432_T001	SEG:seg	:

Description

iron-sulfur protein2 iron-sulfur protein2

Coordinates

chr4:-:231193933..231195575

Molecular Weight (calculated)

24050.8 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.127

Length

227 amino acids

Sequence
(BLAST)

001: MATSAALSTA ANPTQLCRSR AALGKPVKGL GLGMGRERAS QRSITCQAAS SIPADRVPDM EKRKLMNLLL LGAISLPTVG MVVPYGAFFV PAGSGNGGGG
101: TYAKDKLGND ITVEEWLNTH GPNDRTLAQG LKGDPTYLVV EQDKTLATYG INAVCTHLGC VVPWNGAENK FICPCHGSQY NNQGKVVRGP APLSLALVHA
201: DVDDGKVLFV PWVETDFRTG QDPWWSA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.