Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03280.1 | CDY42000 | AT4G39710.1 | 12424338 |
| AT4G03280.1 | CDY42648 | AT4G39710.1 | 12424338 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034200.1-P | Field mustard | plastid | 99.57 | 99.57 |
| CDY21952 | Canola | plastid | 99.13 | 99.13 |
| CDY17951 | Canola | plastid | 90.04 | 90.04 |
| AT4G03280.1 | Thale cress | plastid | 89.18 | 89.96 |
| CDX90891 | Canola | plastid | 89.61 | 89.61 |
| KRH22477 | Soybean | nucleus, plastid | 73.59 | 74.89 |
| Solyc12g005630.1.1 | Tomato | plastid | 74.46 | 74.46 |
| KRH26877 | Soybean | plastid | 73.16 | 74.45 |
| PGSC0003DMT400035747 | Potato | plastid | 73.59 | 73.91 |
| GSMUA_Achr9P24590_001 | Banana | plastid | 72.29 | 73.25 |
| VIT_12s0134g00510.t01 | Wine grape | plastid | 68.4 | 69.91 |
| Os07t0556200-01 | Rice | plastid | 67.97 | 69.78 |
| Zm00001d053432_P001 | Maize | plastid | 67.97 | 69.16 |
| EES19551 | Sorghum | plastid | 67.53 | 69.03 |
| TraesCS2D01G214700.1 | Wheat | plastid | 65.37 | 68.02 |
| Zm00001d016134_P002 | Maize | plastid | 66.23 | 67.7 |
| TraesCS2A01G207900.1 | Wheat | plastid | 64.94 | 67.57 |
| TraesCS2B01G234500.1 | Wheat | plastid | 64.94 | 67.57 |
| HORVU2Hr1G041610.3 | Barley | plastid | 64.5 | 64.5 |
| GSMUA_Achr10P... | Banana | plastid | 58.01 | 62.33 |
Protein Annotations
| KEGG:00195+1.10.9.1 | MapMan:1.1.2.3 | Gene3D:1.20.5.700 | Gene3D:2.102.10.10 | GO:A0A078GBR6 | UniProt:A0A078GBR6 |
| EnsemblPlants:CDY22118 | ProteinID:CDY22118 | ProteinID:CDY22118.1 | InterPro:Cyt_b6-f_cplx_Fe-S_su | InterPro:Cyt_b6_f_Rieske | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009496 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0016679 | GO:GO:0022900 | GO:GO:0042651 |
| GO:GO:0045158 | GO:GO:0051537 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00018506001 | InterPro:IPR017941 | InterPro:IPR036922 |
| HAMAP:MF_01335 | PFAM:PF00355 | PFAM:PF08802 | PRINTS:PR00162 | PFscan:PS51296 | PANTHER:PTHR10134 |
| PANTHER:PTHR10134:SF5 | MetaCyc:PWY-101 | InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf | InterPro:Rieske_Fe-S_prot | InterPro:Rieske_Fe-S_prot_C |
| SUPFAM:SSF50022 | TMHMM:TMhelix | UniParc:UPI0004EE0C05 | SEG:seg | : | : |
Description
BnaA09g01470DCytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GBR6]
Coordinates
chrLK032127:+:632483..634402
Molecular Weight (calculated)
24479.6 Da
IEP (calculated)
8.741
GRAVY (calculated)
-0.045
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSPISPAT QLGSSRSATM LAMMSRGMFV KPARTSHQMV RKEKIGLRIA CQATSIPADN VPDMEKRKLL NLLLVGALSL PTGFMLVPYA TFFAPPGSGG
101: GGGGTPAKDA LGNDVIAAEW LKTHGAGDRT LTQGLKGDPT YLVVENDKTL ATYGINAVCT HLGCVVPWNK AENKFLCPCH GSQYNAQGRV VRGPAPLSLA
201: LAHADIDDGG KVVFVPWVET DFRTGDAPWW S
101: GGGGTPAKDA LGNDVIAAEW LKTHGAGDRT LTQGLKGDPT YLVVENDKTL ATYGINAVCT HLGCVVPWNK AENKFLCPCH GSQYNAQGRV VRGPAPLSLA
201: LAHADIDDGG KVVFVPWVET DFRTGDAPWW S
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
Arabidopsis Description
PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.