Factsheet for PGSC0003DMT400035747

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400056671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	PGSC0003DMT400056671	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005630.1.1	Tomato	plastid	97.39	96.97
KRH26877	Soybean	plastid	76.96	77.97
KRH22477	Soybean	nucleus, plastid	76.52	77.53
AT4G03280.1	Thale cress	plastid	75.22	75.55
GSMUA_Achr9P24590_001	Banana	plastid	74.78	75.44
VIT_12s0134g00510.t01	Wine grape	plastid	73.48	74.78
Bra034200.1-P	Field mustard	plastid	73.91	73.59
CDY22118	Canola	plastid	73.91	73.59
Bra000837.1-P	Field mustard	plastid	73.48	73.16
CDX90891	Canola	plastid	73.48	73.16
CDY17951	Canola	plastid	73.48	73.16
CDY21952	Canola	plastid	73.04	72.73
Os07t0556200-01	Rice	plastid	70.87	72.44
EES19551	Sorghum	plastid	70.87	72.12
Zm00001d053432_P001	Maize	plastid	70.87	71.81
TraesCS2A01G207900.1	Wheat	plastid	69.13	71.62
TraesCS2B01G234500.1	Wheat	plastid	69.13	71.62
TraesCS2D01G214700.1	Wheat	plastid	69.13	71.62
Zm00001d016134_P002	Maize	plastid	68.7	69.91
GSMUA_Achr10P...	Banana	plastid	63.48	67.91
HORVU2Hr1G041610.3	Barley	plastid	66.52	66.23

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	ProteinID:AAQ90151	ProteinID:AAQ90151.1
ProteinID:AFW90568	ProteinID:AFW90568.1	EMBL:AY300039	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010196	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651
GO:GO:0042742	GO:GO:0045158	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
GO:GO:0080167	InterPro:IPR017941	InterPro:IPR036922	EMBL:JX576212	UniProt:M1B2S2	HAMAP:MF_01335
PFAM:PF00355	PFAM:PF08802	EnsemblPlantsGene:PGSC0003DMG400013751	PGSC:PGSC0003DMG400013751	EnsemblPlants:PGSC0003DMT400035747	PRINTS:PR00162
PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI0002955A5E	SEG:seg	:

Description

Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400013751]

Coordinates

chr12:+:6909995..6912636

Molecular Weight (calculated)

24292.3 Da

IEP (calculated)

8.135

GRAVY (calculated)

-0.043

Length

230 amino acids

Sequence
(BLAST)

001: MASSTLSHVI PSQLCSSKSG VSSVSQALLV KPMKINGHGM GKDKRMKVKC MAASIPADDR VPDMEKRNLM NLLLLGALAL PTGGMLVPYA TFFAPPGSGG
101: GSSGTIAKDA NGNDVVVTEW LKTHSPGTRT LTQGLKGDPT YLVVENDGTL ATYGINAVCT HLGCVVPWNT AENKFICPCH GSQYNNQGKV VRGPAPLSLA
201: LAHADIDDGK VVFVPWVETD FRTGDAPWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.