Factsheet for HORVU2Hr1G041610.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	HORVU6Hr1G075080.2	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G214700.1	Wheat	plastid	90.04	93.69
TraesCS2B01G234500.1	Wheat	plastid	89.61	93.24
TraesCS2A01G207900.1	Wheat	plastid	89.18	92.79
Os07t0556200-01	Rice	plastid	77.49	79.56
Zm00001d016134_P002	Maize	plastid	77.06	78.76
EES19551	Sorghum	plastid	77.06	78.76
Zm00001d053432_P001	Maize	plastid	76.19	77.53
VIT_03s0017g00940.t01	Wine grape	mitochondrion	61.9	73.71
GSMUA_Achr9P24590_001	Banana	plastid	67.97	68.86
KRH26877	Soybean	plastid	67.53	68.72
KRH22477	Soybean	nucleus, plastid	67.53	68.72
VIT_19s0014g03850.t01	Wine grape	plastid	66.67	67.54
Solyc12g005630.1.1	Tomato	plastid	67.53	67.53
PGSC0003DMT400035747	Potato	plastid	66.23	66.52
VIT_12s0134g00510.t01	Wine grape	plastid	64.07	65.49
AT4G03280.1	Thale cress	plastid	64.07	64.63
CDY22118	Canola	plastid	64.5	64.5
Bra034200.1-P	Field mustard	plastid	64.5	64.5
GSMUA_Achr10P...	Banana	plastid	59.74	64.19
CDY21952	Canola	plastid	64.07	64.07
CDY17951	Canola	plastid	63.64	63.64
CDX90891	Canola	plastid	63.2	63.2
Bra000837.1-P	Field mustard	plastid	63.2	63.2

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	UniProt:A0A287HTA7	InterPro:Cyt_b6-f_cplx_Fe-S_su
InterPro:Cyt_b6_f_Rieske	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679
GO:GO:0022900	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G041610
EnsemblPlants:HORVU2Hr1G041610.3	InterPro:IPR017941	InterPro:IPR036922	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	UniParc:UPI000B465AA9	SEG:seg	:

Description

Cytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:A0A287HTA7]

Coordinates

chrchr2H:-:205974918..205976119

Molecular Weight (calculated)

24877.9 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.255

Length

231 amino acids

Sequence
(BLAST)

001: PPCSSQPPWP PPRSPPPPTP PRQLCRTRAS SLCKPVKGLG FGRERIPRNI TCMAGSISAD RVPDMSKREL MNLLLLGAIS LPTFGMLVPY GSFLVPAGSG
101: SNAGGVAAKD KLGNDILVED WLKTHGPNDR TLAQGLKGDP TYLVVESDKT LATYGINAVC THLGCVVPWN AAENKFLCPC HGSQYNNQGK VVRGPAPQSL
201: ALVHADVDDG KVVFVPWVET DFRTGENPWW K

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.