Factsheet for VIT_12s0134g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	VIT_07s0031g01150.t01	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00940.t01	Wine grape	mitochondrion	69.47	80.93
VIT_19s0014g03850.t01	Wine grape	plastid	78.32	77.63
KRH22477	Soybean	nucleus, plastid	76.99	76.65
KRH26877	Soybean	plastid	76.55	76.21
GSMUA_Achr9P24590_001	Banana	plastid	75.66	75.0
PGSC0003DMT400035747	Potato	plastid	74.78	73.48
Solyc12g005630.1.1	Tomato	plastid	74.78	73.16
Os07t0556200-01	Rice	plastid	71.24	71.56
AT4G03280.1	Thale cress	plastid	69.91	69.0
EES19551	Sorghum	plastid	68.58	68.58
TraesCS2D01G214700.1	Wheat	plastid	67.26	68.47
TraesCS2B01G234500.1	Wheat	plastid	67.26	68.47
TraesCS2A01G207900.1	Wheat	plastid	67.26	68.47
Bra000837.1-P	Field mustard	plastid	69.91	68.4
CDY22118	Canola	plastid	69.91	68.4
CDY17951	Canola	plastid	69.91	68.4
CDX90891	Canola	plastid	69.91	68.4
Bra034200.1-P	Field mustard	plastid	69.91	68.4
CDY21952	Canola	plastid	69.47	67.97
Zm00001d053432_P001	Maize	plastid	68.14	67.84
Zm00001d016134_P002	Maize	plastid	67.7	67.7
GSMUA_Achr10P...	Banana	plastid	64.16	67.44
HORVU2Hr1G041610.3	Barley	plastid	65.49	64.07

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	EntrezGene:100256300	wikigene:100256300	Gene3D:2.102.10.10
ProteinID:CCB44751	ProteinID:CCB44751.1	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	UniProt:F6GXR5	EMBL:FN594966
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
EntrezGene:LOC100256300	wikigene:LOC100256300	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162
PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TIGR:TC62694	TMHMM:TMhelix	UniParc:UPI000198457F	ArrayExpress:VIT_12s0134g00510
EnsemblPlantsGene:VIT_12s0134g00510	EnsemblPlants:VIT_12s0134g00510.t01	unigene:Vvi.7648	RefSeq:XP_002276770	RefSeq:XP_002276770.1	RefSeq:XP_003633324
RefSeq:XP_003633324.1	:	:	:	:	:

Description

Cytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:F6GXR5]

Coordinates

chr12:+:8142143..8145268

Molecular Weight (calculated)

24425.4 Da

IEP (calculated)

8.811

GRAVY (calculated)

-0.055

Length

226 amino acids

Sequence
(BLAST)

001: MASFSTLSHT CPSQLCFTKN GVVSKSLANP TRTHFLKKGN YLRVRFQATS FPADDRVPDM GKRQLMNLLL LGAVSLPTAI MLIPYASFFV PPGSGSAGGA
101: TIAKDAIGND VIAEEWLKNH GPGDRTLTQG LKGDPTYLVV EKDRTLAPYG INAVCTHLGC VVPWNAAENK FICPCHGSQY NNQGKVVRGP APLSLALVHA
201: DVDDGKVIFV PWVKTDFRTG EAPWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.