CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42000
CDY42648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	CDY42000	AT4G39710.1	12424338
AT4G03280.1	CDY42648	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000837.1-P	Field mustard	plastid	100.0	100.0
CDY17951	Canola	plastid	99.13	99.13
CDY22118	Canola	plastid	89.61	89.61
CDY21952	Canola	plastid	88.74	88.74
AT4G03280.1	Thale cress	plastid	87.01	87.77
Solyc12g005630.1.1	Tomato	plastid	73.59	73.59
PGSC0003DMT400035747	Potato	plastid	73.16	73.48
KRH22477	Soybean	nucleus, plastid	71.43	72.69
GSMUA_Achr9P24590_001	Banana	plastid	71.43	72.37
KRH26877	Soybean	plastid	71.0	72.25
Os07t0556200-01	Rice	plastid	69.26	71.11
Zm00001d053432_P001	Maize	plastid	68.83	70.04
EES19551	Sorghum	plastid	68.4	69.91
VIT_12s0134g00510.t01	Wine grape	plastid	68.4	69.91
Zm00001d016134_P002	Maize	plastid	67.1	68.58
TraesCS2A01G207900.1	Wheat	plastid	65.37	68.02
TraesCS2B01G234500.1	Wheat	plastid	65.37	68.02
TraesCS2D01G214700.1	Wheat	plastid	65.37	68.02
HORVU2Hr1G041610.3	Barley	plastid	63.2	63.2
GSMUA_Achr10P...	Banana	plastid	57.14	61.4

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	GO:A0A078DNQ7	EnsemblPlants:CDX90891
ProteinID:CDX90891	ProteinID:CDX90891.1	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0016679	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00151620001
InterPro:IPR017941	InterPro:IPR036922	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162
PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	MetaCyc:PWY-101	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI000254052F	SEG:seg

Description

BnaA03g25710D

Coordinates

chrLK031864:-:1171125..1172551

Molecular Weight (calculated)

24568.6 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.065

Length

231 amino acids

Sequence
(BLAST)

001: MTSSMASSSL SPATQLGSSR NAMLAMSRVM FVKPTNHQMV RKEKLGLRIA CQATSIPADN VPDMEKRKLL NLLLVGALSL PTGFMLVPYA TFFAPPGSGG
101: GGGGTPAKDA LGNDVVAAEW LKTHGPGDRT LTQGLKGDPT YLVVENDKTL ATYGINAVCT HLGCVVPWNK AENKFLCPCH GSQYNAQGRV VRGPAPLSLA
201: LAHADIDDSG KVLFVPWVET DFRTGDAPWW S

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.