CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH43236
KRH59400

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	KRH43236	AT4G39710.1	12424338
AT4G03280.1	KRH59400	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22477	Soybean	nucleus, plastid	97.36	97.36
GSMUA_Achr9P24590_001	Banana	plastid	80.18	79.82
Solyc12g005630.1.1	Tomato	plastid	78.85	77.49
PGSC0003DMT400035747	Potato	plastid	77.97	76.96
VIT_12s0134g00510.t01	Wine grape	plastid	76.21	76.55
AT4G03280.1	Thale cress	plastid	74.45	73.8
Os07t0556200-01	Rice	plastid	72.69	73.33
CDY22118	Canola	plastid	74.45	73.16
Bra034200.1-P	Field mustard	plastid	74.45	73.16
CDY21952	Canola	plastid	74.01	72.73
TraesCS2A01G207900.1	Wheat	plastid	70.04	71.62
TraesCS2B01G234500.1	Wheat	plastid	70.04	71.62
TraesCS2D01G214700.1	Wheat	plastid	70.04	71.62
CDY17951	Canola	plastid	72.25	71.0
CDX90891	Canola	plastid	72.25	71.0
Bra000837.1-P	Field mustard	plastid	72.25	71.0
EES19551	Sorghum	plastid	70.48	70.8
GSMUA_Achr10P...	Banana	plastid	66.52	70.23
Zm00001d053432_P001	Maize	plastid	70.04	70.04
Zm00001d016134_P002	Maize	plastid	69.16	69.47
HORVU2Hr1G041610.3	Barley	plastid	68.72	67.53

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	EMBL:ACUP02007755	InterPro:Cyt_b6-f_cplx_Fe-S_su
InterPro:Cyt_b6_f_Rieske	EnsemblPlantsGene:GLYMA_12G199400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016679	GO:GO:0022900	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114
UniProt:I1LUB3	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH26877	ProteinID:KRH26877	ProteinID:KRH26877.1
HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF5	MetaCyc:PWY-101	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C
SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI00023D0799	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:36079045..36082356

Molecular Weight (calculated)

24188.2 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.033

Length

227 amino acids

Sequence
(BLAST)

001: MASTTLSPTT PSQLCSGKSG IFSPSQALLV KPVKRQMMGK SKGMRIACQA TSIPADRVPD MGKRQLMNLL LLGAISLPSA GMLIPYTYFF VPPGSGSSAG
101: GTVAKDAVGN DVIAENWLKA HGPGDRTLAQ GLKGDPTYLV VEKDRTLATY AINAVCTHLG CVVPWNQAEN KFICPCHGSQ YNDQGRVVRG PAPLSLALAH
201: CDIDDGKVVF VPWVETDFRT GDAPWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.