CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22477
KRH26877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	KRH22477	AT4G03280.1	12424338
AT4G39710.1	KRH26877	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59400	Soybean	extracellular, vacuole	64.59	85.44
VIT_07s0031g01150.t01	Wine grape	plastid	66.03	66.99
AT4G39710.1	Thale cress	plastid	65.07	62.67
Solyc04g054520.2.1	Tomato	nucleus	62.2	62.2
PGSC0003DMT400056671	Potato	plastid	62.2	62.2
Bra011839.1-P	Field mustard	plastid	55.02	57.5
CDY42000	Canola	plastid	55.02	57.5
CDY42648	Canola	plastid	55.02	57.5
GSMUA_Achr5P24380_001	Banana	plastid	60.29	53.85
Os02t0751600-01	Rice	plastid	56.46	51.3
KXG30740	Sorghum	plastid	54.55	50.44
Zm00001d018077_P002	Maize	plastid	54.55	50.44
TraesCS6B01G331700.1	Wheat	plastid	53.11	50.23
TraesCS6A01G302500.1	Wheat	plastid	53.11	50.0
TraesCS6D01G282000.1	Wheat	plastid	52.63	49.55
HORVU6Hr1G075080.2	Barley	plastid	53.59	47.46
KRH42434	Soybean	plastid	37.8	36.57
KRH66149	Soybean	endoplasmic reticulum	24.4	34.69
KRH07427	Soybean	endoplasmic reticulum	23.92	32.47
KRH24569	Soybean	plastid	24.4	21.98
KRH29576	Soybean	plastid	23.92	21.55
KRH77741	Soybean	nucleus	24.88	10.34
KRH27794	Soybean	nucleus	24.88	10.34
KRG89916	Soybean	nucleus	25.84	8.99

Protein Annotations

MapMan:1.1.8.1.4.4	EntrezGene:100500547	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02004851	EnsemblPlantsGene:GLYMA_08G139100
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077	UniProt:I1KT60
InterPro:IPR001179	EnsemblPlants:KRH43236	ProteinID:KRH43236	ProteinID:KRH43236.1	ProteinID:KRH43237.1	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534
UniParc:UPI00023C5F34	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:10640313..10642303

Molecular Weight (calculated)

22342.9 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.056

Length

209 amino acids

Sequence
(BLAST)

001: MALSVSSPSC VRVPSCFWKP NGKSCKERTK VSCAAHNDNK NPLVGIGIGV VTSCVMGLTA LDADATRIEY YATVAEPLCE YNYVKSGLGY CDIAEGFGDE
101: APLGELINVH YTARFADGIV FDSSYKRARP LTMRIGVGKV IKGLDQGILG GEGVPPMRIG GKRKLQIPPH LAYGPEPAGC FSGDCNIPAN ATLLYDINFV
201: EVYSGNRSK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.