Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 9
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 mitochondrion: 27780359 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66149 | Soybean | endoplasmic reticulum | 89.61 | 93.88 |
| PGSC0003DMT400022512 | Potato | extracellular | 72.73 | 75.17 |
| Solyc09g057670.2.1 | Tomato | extracellular | 71.43 | 73.83 |
| EER99137 | Sorghum | endoplasmic reticulum | 70.78 | 73.15 |
| VIT_00s0260g00060.t01 | Wine grape | endoplasmic reticulum | 70.13 | 72.97 |
| Os09t0501850-01 | Rice | plasma membrane | 71.43 | 71.43 |
| GSMUA_Achr7P22790_001 | Banana | endoplasmic reticulum | 68.83 | 69.74 |
| TraesCS5B01G278800.1 | Wheat | endoplasmic reticulum, golgi | 68.83 | 69.74 |
| TraesCS5D01G286500.1 | Wheat | golgi | 68.18 | 69.08 |
| TraesCS5A01G279500.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 67.53 | 68.42 |
| HORVU5Hr1G075490.3 | Barley | endoplasmic reticulum, extracellular, golgi | 67.53 | 67.53 |
| Zm00001d021021_P001 | Maize | endoplasmic reticulum | 71.43 | 67.48 |
| KRH59400 | Soybean | extracellular, vacuole | 27.92 | 27.22 |
| KRH43236 | Soybean | nucleus | 32.47 | 23.92 |
| KRH42434 | Soybean | plastid | 32.47 | 23.15 |
| KRH29576 | Soybean | plastid | 26.62 | 17.67 |
| KRH24569 | Soybean | plastid | 26.62 | 17.67 |
| KRH77741 | Soybean | nucleus | 32.47 | 9.94 |
| KRH27794 | Soybean | nucleus | 32.47 | 9.94 |
| KRG89916 | Soybean | nucleus | 31.17 | 7.99 |
Protein Annotations
| MapMan:18.12.2 | Gene3D:3.10.50.40 | UniProt:A0A0R0FW30 | EMBL:ACUP02009988 | EnsemblPlantsGene:GLYMA_16G088200 | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR001179 | EnsemblPlants:KRH07427 | ProteinID:KRH07427 |
| ProteinID:KRH07427.1 | PFAM:PF00254 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR10516 |
| PANTHER:PTHR10516:SF293 | SUPFAM:SSF54534 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001B837A7 | SEG:seg |
Description
hypothetical protein
Coordinates
chr16:-:11156357..11160572
Molecular Weight (calculated)
16699.3 Da
IEP (calculated)
8.725
GRAVY (calculated)
-0.186
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRHSIMNA LPILLFFLFV SALVSAKKTG DVTELQIGVK HKPVSCEVQA HKGDRVKVHY RGKLTDGTVF DSSFERNNPI EFELGTGQVI KGWDQGLLGM
101: CLGEKRKLKI PSKLGYGEQG SPPTIPGGAT LIFDAELVGV NDKSLGEGKG NNEL
101: CLGEKRKLKI PSKLGYGEQG SPPTIPGGAT LIFDAELVGV NDKSLGEGKG NNEL
001: MASKMSLRYS LFLIFFSLIS LQGFAKKTGD VSELQIGVKF KPKTCEVQAH KGDTIKVHYR GKLTDGTVFD SSFERGDPFE FKLGSGQVIK GWDQGLLGAC
101: VGEKRKLKIP AKLGYGEQGS PPTIPGGATL IFDTELIAVN EKPAGGEEYG GDEDDEGYGN DEL
101: VGEKRKLKIP AKLGYGEQGS PPTIPGGATL IFDTELIAVN EKPAGGEEYG GDEDDEGYGN DEL
Arabidopsis Description
FKBP15-2Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UPA7]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.