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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • vacuole 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus, vacuole
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH77741 Soybean nucleus 92.25 92.25
AT5G05420.1 Thale cress cytosol 16.1 56.64
VIT_16s0022g01760.t01 Wine grape nucleus 52.68 50.48
Solyc03g007170.2.1 Tomato nucleus 43.14 45.21
PGSC0003DMT400079626 Potato nucleus 42.74 44.33
Zm00001d003535_P001 Maize nucleus 11.53 41.43
TraesCS2A01G314800.2 Wheat nucleus 37.38 39.83
Zm00001d025522_P001 Maize plasma membrane 39.16 39.8
EES10880 Sorghum nucleus 38.97 39.2
TraesCS2B01G333300.1 Wheat nucleus 37.77 39.01
TraesCS2D01G313000.1 Wheat nucleus 37.77 39.01
Os04t0446500-02 Rice nucleus 39.96 38.29
HORVU2Hr1G078350.3 Barley nucleus 36.78 37.53
GSMUA_Achr3P07930_001 Banana nucleus 44.73 36.23
KRH66149 Soybean endoplasmic reticulum 10.14 34.69
KRH07427 Soybean endoplasmic reticulum 9.94 32.47
KRG89916 Soybean nucleus 35.19 29.45
KRH42434 Soybean plastid 12.33 28.7
KRH43236 Soybean nucleus 10.34 24.88
KRH29576 Soybean plastid 10.34 22.41
KRH24569 Soybean plastid 10.14 21.98
KRH59400 Soybean extracellular, vacuole 6.56 20.89
Protein Annotations
EntrezGene:100792856MapMan:18.12.2Gene3D:2.60.120.340Gene3D:3.10.50.40EMBL:ACUP02006733ncoils:Coil
EnsemblPlantsGene:GLYMA_11G014400GO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016853GO:GO:0019538UniProt:I1LG49
InterPro:IPR001179EnsemblPlants:KRH27794ProteinID:KRH27794ProteinID:KRH27794.1PFAM:PF00254InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_domPFscan:PS50059PANTHER:PTHR43811PANTHER:PTHR43811:SF9SUPFAM:SSF54534UniParc:UPI000233D289
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr11:+:996246..1000578
Molecular Weight (calculated)
55444.7 Da
IEP (calculated)
5.313
GRAVY (calculated)
-0.925
Length
503 amino acids
Sequence
(BLAST)
001: MGFWGIEVKP GRPCPYHADN VRGKLHVTQA TLGIGSSSEK SILQCSSGHK SPVFLCSLLP DKVESCPLNL EFDADDLVAF SVVGSRSIHL SGYFAADDGD
101: DLRDDYEYDS WGEDIEGTES EESSEYDSED GYADDFIVDS DTDMYPSSPV PNSGVVIEEI VDDDKPENGY DPTKKLKKKK QVAQLKEKDN KSSGLPIVAK
201: GDTDLVESED EDGFPIPTAE KGVSVSQKAE AETKGEQARK KAEKAKKEKD VDHSASVKRK VDTADEDEPQ DGKKKKKRNK LKEHIKGESD HATGNSNETK
301: ITEPDEKHPE EIKTTINLSD VSHAKDEDDG KLSNNEVLAE KKNKKKKKKK TKESEGEVAA NQITITPEKQ NLSTSEKKGQ KQTETKPSQV RTFPNGLIIE
401: EVFMGKPDGK KAAPGKKVSV KYIGKLQKDG KIFDSNVGRA PFKFRLGVGQ VIKGWEVGIN GMRIGDKRRI TIPPSMGYAD KRVGSIPPNS WLVFDVELVD
501: VDR
Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)
001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ
Arabidopsis Description
FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.