CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025522_P001	Maize	plasma membrane	90.8	91.72
Os04t0446500-02	Rice	nucleus	69.8	66.48
HORVU2Hr1G078350.3	Barley	nucleus	64.0	64.91
TraesCS2B01G333300.1	Wheat	nucleus	63.0	64.68
TraesCS2D01G313000.1	Wheat	nucleus	62.8	64.48
TraesCS2A01G314800.2	Wheat	nucleus	60.2	63.77
AT5G05420.1	Thale cress	cytosol	15.2	53.15
Zm00001d003535_P001	Maize	nucleus	13.4	47.86
Solyc03g007170.2.1	Tomato	nucleus	37.6	39.17
KRH27794	Soybean	nucleus	39.2	38.97
KRH77741	Soybean	nucleus	39.2	38.97
PGSC0003DMT400079626	Potato	nucleus	37.4	38.56
EER99137	Sorghum	endoplasmic reticulum	11.2	37.58
VIT_16s0022g01760.t01	Wine grape	nucleus	39.4	37.52
EES04100	Sorghum	endoplasmic reticulum	11.4	36.77
KXG35300	Sorghum	nucleus	32.0	35.87
GSMUA_Achr3P07930_001	Banana	nucleus	40.8	32.85
KXG30740	Sorghum	plastid	10.2	22.57
EES15264	Sorghum	plastid	10.0	20.66
OQU76834	Sorghum	mitochondrion, plastid	10.4	18.31

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	EntrezGene:8080368	UniProt:C5Y997	EnsemblPlants:EES10880
ProteinID:EES10880	ProteinID:EES10880.1	InterPro:FK506_BP	GO:GO:0000412	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016853	GO:GO:0018208	GO:GO:0019538	InterPro:IPR001179	PFAM:PF00254
PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9
EnsemblPlantsGene:SORBI_3006G095400	SUPFAM:SSF54534	unigene:Sbi.2015	UniParc:UPI0001A86DA5	RefSeq:XP_002446552.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:46536206..46540323

Molecular Weight (calculated)

54604.9 Da

IEP (calculated)

4.985

GRAVY (calculated)

-1.024

Length

500 amino acids

Sequence
(BLAST)

001: MSSFWGVEVK PGKPHTLTHG DFIGRLRLTQ ATLGAEVGKG EKGAGLKRCV LQCSVENKDP VFLCVLMPEQ SETCHLELEF EEEVTFSVIG QRSIHLAGYY
101: MTDVCEDRSD SDSGSDSLQG SDEDGFLEED DDGNMVMGYS DSEDDDSEYD SESDDEEMAY NQGRGKSSVV IEEIEEDDKA AVAGVQKGSK KKQCRENGDE
201: SQLQLAVRNP PTESLESEDE DGFPVSFSES KKSSESVSNK KGGKDKETSN EDRKRKSGAI SDRGDSSGEV NAETDGASSK KKKKAKDKST DVDTGKVNNE
301: EKEIKQHDSP ADSVSKKQKK KKNKNKSASE GDASEQSAKN NNIHKDNEEA SAQEASKKNK KKKAGDINRS ESQAANGLGE SDRKEPLQTR TFANGMIIQE
401: VEMGKPDGKK ATRGKKVSVR YIGKLKNGTI FDSNVSGRPF EFRLGVGQVI SGWDVGVNGM RVGDKRRLTI PPSMGYGSKR VGQIPQNSTL IFDVELVNVK

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.