Factsheet for Solyc03g007170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079626	Potato	nucleus	95.42	94.43
AT5G05420.1	Thale cress	cytosol	17.5	58.74
KRH77741	Soybean	nucleus	46.67	44.53
VIT_16s0022g01760.t01	Wine grape	nucleus	48.54	44.38
KRH27794	Soybean	nucleus	45.21	43.14
Zm00001d003535_P001	Maize	nucleus	11.67	40.0
TraesCS2A01G314800.2	Wheat	nucleus	37.71	38.35
HORVU2Hr1G078350.3	Barley	nucleus	39.17	38.13
TraesCS2D01G313000.1	Wheat	nucleus	38.54	37.99
TraesCS2B01G333300.1	Wheat	nucleus	38.54	37.99
EES10880	Sorghum	nucleus	39.17	37.6
Zm00001d025522_P001	Maize	plasma membrane	38.54	37.37
Os04t0446500-02	Rice	nucleus	40.83	37.33
GSMUA_Achr3P07930_001	Banana	nucleus	46.04	35.59
Solyc09g057670.2.1	Tomato	extracellular	10.62	34.23
Solyc01g091340.2.1	Tomato	nucleus	38.75	33.76
Solyc04g054520.2.1	Tomato	nucleus	10.83	24.88
Solyc08g006540.2.1	Tomato	plastid	12.5	22.81
Solyc04g015040.2.1	Tomato	plastid	10.0	20.43
Solyc02g005290.2.1	Tomato	nucleus	19.17	17.76

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	ncoils:Coil	InterPro:FK506_BP	GO:GO:0000412
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0018208	GO:GO:0019538
InterPro:IPR001179	UniProt:K4BEE0	InterPro:Nucleoplasmin_core_dom_sf	PFAM:PF00254	PIRSF:PIRSF001473	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534	SUPFAM:SSF69203
EnsemblPlantsGene:Solyc03g007170.2	EnsemblPlants:Solyc03g007170.2.1	UniParc:UPI0002767F67	SEG:seg	:	:

Description

FK506-binding protein [Source:UniProtKB/TrEMBL;Acc:K4BEE0]

Coordinates

chr3:-:1743953..1748364

Molecular Weight (calculated)

53015.2 Da

IEP (calculated)

5.159

GRAVY (calculated)

-1.136

Length

480 amino acids

Sequence
(BLAST)

001: MAFWGVELKS GKPFTHNFEK ERGRLHISQA TLGSGSSNKK CIVQCKVGDK EPIYLCSLLP EKLETCPLNL EFEEDDDVTF SVVGSHSVHL SGFFYGESED
101: CCGDEHGSDY EEGASETDSA SDDSFEFNYD TEDEDGSTDD DDFSMYPPSP IPNSGVRIEE ILEDEKPADE NGTSKKPKKK KNHSNGIDDS ERQIVVKGNT
201: ESPLMESEDE DGFPISAPSE NKTKSVRSQK SDGTKDQDTG EEAGEKKGLK KRLRDDTGKD NDQQGKDNAK QNKKNKKKKV VDGEELDHED VLKRSANPEH
301: VEGNDEAFSV GKTEDGQKPT NEKDTEKKKK KKKNKKNQQD GKAVTEVEKD KKNESQEENA GTKPSHARTF GNGLVIEELA MGKPDGKKAS PGKKVGVRYI
401: GKLKKNGKIF DSNIGKRPFE FRLGIGQVIK GWDVGVNGMR VGDKRRITIP PAMGYGAKGA GRDIPPNSWL VFDVELVNVN

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.