Factsheet for VIT_16s0022g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G05420.1	Thale cress	cytosol	16.38	60.14
KRH27794	Soybean	nucleus	50.48	52.68
KRH77741	Soybean	nucleus	49.9	52.09
Solyc03g007170.2.1	Tomato	nucleus	44.38	48.54
PGSC0003DMT400079626	Potato	nucleus	44.19	47.84
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	11.62	41.22
VIT_19s0093g00480.t01	Wine grape	nucleus	43.43	41.08
Zm00001d025522_P001	Maize	plasma membrane	37.52	39.8
EES10880	Sorghum	nucleus	37.52	39.4
TraesCS2A01G314800.2	Wheat	nucleus	34.86	38.77
HORVU2Hr1G078350.3	Barley	nucleus	36.19	38.54
TraesCS2B01G333300.1	Wheat	nucleus	35.62	38.4
TraesCS2D01G313000.1	Wheat	nucleus	35.43	38.19
Os04t0446500-02	Rice	nucleus	37.9	37.9
GSMUA_Achr3P07930_001	Banana	nucleus	44.19	37.36
Zm00001d003535_P001	Maize	nucleus	9.71	36.43
VIT_01s0011g00930.t01	Wine grape	plastid	11.43	27.78
VIT_07s0031g01150.t01	Wine grape	plastid	10.48	26.7
VIT_05s0094g00100.t01	Wine grape	plastid	9.33	21.21

Protein Annotations

EntrezGene:100258340	wikigene:100258340	MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	ProteinID:CBI24518
ProteinID:CBI24518.3	UniProt:D7T228	InterPro:FK506_BP	EMBL:FN595506	GO:GO:0000412	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0018208	GO:GO:0019538	InterPro:IPR001179
EntrezGene:LOC100258340	wikigene:LOC100258340	PFAM:PF00254	PIRSF:PIRSF001473	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9	SUPFAM:SSF54534	TIGR:TC69540	UniParc:UPI0001984F39
ArrayExpress:VIT_16s0022g01760	EnsemblPlantsGene:VIT_16s0022g01760	EnsemblPlants:VIT_16s0022g01760.t01	unigene:Vvi.15845	RefSeq:XP_002268439	RefSeq:XP_002268439.1
SEG:seg	:	:	:	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7T228]

Coordinates

chr16:+:13936419..13955279

Molecular Weight (calculated)

57994.4 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.923

Length

525 amino acids

Sequence
(BLAST)

001: MFWGIKVVPG EEHPLIPSDV LGTLHITQAT LDTGPSKERS IVQCSVGDKE PIFLCSLSRG KVECCPLNLE FEGNESVAFS VIGPQSVYLS GYFRADSKDD
101: DAEHYEIDSD GEDIAETDED ESSTYDTEDE YDDDFIDDSD FEMFPPSPVP NSGVVIEEIV EEEKLANGSN QSKRLKKPQL NESDENKDSQ HQIVAKSGNG
201: VQVLESEDED GFPIAASHKS KSNDQNPASK AEEKTDKITT KEGKKKKAKD SGDHATGLKR KLNSVVQEDQ PEREASQPFD SSKLSTEVVT ENDVKRKKKK
301: QQKERKANKA GIGDKSEVHM EDKTQSEEAE TSNAHQVLPV ANELDQKVNN EKSMDIVSDH DVDENHSEKK KKKKKKKSTG DVKKEQNITA VGDENRSIVE
401: MEKKTEAKRS QVRTFGNGLV IEEVAMGKPD GKRASPGKKV SVHYIGKLKK NGKIFDSNVG RAPFKFRLGV GQVIKGWDVG VNGMRVGDKR RLTIPPSMGY
501: GDQGAGKTIP PNSWLVFDVE LVAVN

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.