Factsheet for VIT_07s0031g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0134g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	VIT_12s0134g00510.t01	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054520.2.1	Tomato	nucleus	67.48	66.51
PGSC0003DMT400056671	Potato	plastid	67.48	66.51
KRH43236	Soybean	nucleus	66.99	66.03
AT4G39710.1	Thale cress	plastid	67.96	64.52
KRH59400	Soybean	extracellular, vacuole	48.54	63.29
Bra011839.1-P	Field mustard	plastid	58.74	60.5
CDY42000	Canola	plastid	58.74	60.5
CDY42648	Canola	plastid	58.25	60.0
GSMUA_Achr5P24380_001	Banana	plastid	66.5	58.55
TraesCS6B01G331700.1	Wheat	plastid	61.65	57.47
TraesCS6A01G302500.1	Wheat	plastid	61.65	57.21
TraesCS6D01G282000.1	Wheat	plastid	61.65	57.21
Zm00001d018077_P002	Maize	plastid	61.65	56.19
KXG30740	Sorghum	plastid	61.16	55.75
HORVU6Hr1G075080.2	Barley	plastid	61.65	53.81
Os02t0751600-01	Rice	plastid	59.71	53.48
VIT_01s0011g00930.t01	Wine grape	plastid	37.86	36.11
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	23.79	33.11
VIT_05s0094g00100.t01	Wine grape	plastid	24.27	21.64
VIT_19s0093g00480.t01	Wine grape	nucleus	29.13	10.81
VIT_16s0022g01760.t01	Wine grape	nucleus	26.7	10.48

Protein Annotations

MapMan:1.1.8.1.4.4	EntrezGene:100268058	wikigene:100268058	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:CBI21467
ProteinID:CBI21467.3	UniProt:D7SW18	EMBL:FN595233	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	EntrezGene:LOC100268058	wikigene:LOC100268058	PFAM:PF00254	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	TIGR:TC56207
TIGR:TC68689	TIGR:TC69158	UniParc:UPI00015C9B8D	ArrayExpress:VIT_07s0031g01150	EnsemblPlantsGene:VIT_07s0031g01150	EnsemblPlants:VIT_07s0031g01150.t01
unigene:Vvi.1425	RefSeq:XP_002281281	RefSeq:XP_002281281.1	RefSeq:XP_010652832.1	RefSeq:XP_010652833.1	SEG:seg

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7SW18]

Coordinates

chr7:+:17258833..17262154

Molecular Weight (calculated)

21568.2 Da

IEP (calculated)

8.460

GRAVY (calculated)

0.124

Length

206 amino acids

Sequence
(BLAST)

001: MAISALTVAT VKPQTLQTHH PKPSLSFKPI ANCISSTKRP VLDVGIGLLA ASVVALSPLE ATATRIEYYA TVGEPNCELN FAKSGLGYCD VAVGSGEEAP
101: FGELINVHYT ARFADGTVFD SSYKRARPLT MRIGAGKLIK GLDQGILGGE GVPPMLVGGK RKLRIPPALA YGPEPAGCFS GDCNIPANAT LLYDINFVGI
201: YSGNAK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.