Factsheet for AT4G39710.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011839.1-P	Field mustard	plastid	78.34	85.0
CDY42000	Canola	plastid	78.34	85.0
CDY42648	Canola	plastid	78.34	85.0
VIT_07s0031g01150.t01	Wine grape	plastid	64.52	67.96
KRH59400	Soybean	extracellular, vacuole	47.47	65.19
KRH43236	Soybean	nucleus	62.67	65.07
Solyc04g054520.2.1	Tomato	nucleus	60.83	63.16
PGSC0003DMT400056671	Potato	plastid	60.37	62.68
KXG30740	Sorghum	plastid	59.91	57.52
TraesCS6D01G282000.1	Wheat	plastid	58.06	56.76
TraesCS6A01G302500.1	Wheat	plastid	57.6	56.31
TraesCS6B01G331700.1	Wheat	plastid	57.14	56.11
GSMUA_Achr5P24380_001	Banana	plastid	59.91	55.56
Zm00001d018077_P002	Maize	plastid	57.14	54.87
Os02t0751600-01	Rice	plastid	57.14	53.91
HORVU6Hr1G075080.2	Barley	plastid	57.6	52.97
AT5G45680.1	Thale cress	plastid	35.48	37.02
AT5G05420.1	Thale cress	cytosol	20.74	31.47
AT3G25220.1	Thale cress	endoplasmic reticulum	21.66	30.72
AT5G48580.1	Thale cress	endoplasmic reticulum, extracellular	21.2	28.22
AT2G43560.1	Thale cress	plastid	24.42	23.77
AT3G12340.1	Thale cress	nucleus	25.81	11.22
AT4G25340.1	Thale cress	nucleus	23.04	10.48

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	EntrezGene:830126	UniProt:A0A178UXR8	ProteinID:AEE87107.1
EMBL:AJ242481	ProteinID:ANM67449.1	ArrayExpress:AT4G39710	EnsemblPlantsGene:AT4G39710	RefSeq:AT4G39710	TAIR:AT4G39710
RefSeq:AT4G39710-TAIR-G	EnsemblPlants:AT4G39710.1	TAIR:AT4G39710.1	EMBL:AY052226	ProteinID:CAA18757.1	ProteinID:CAB80634.1
Symbol:FKBP16-2	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	RefSeq:NP_001329278.1	RefSeq:NP_568067.1	ProteinID:OAO98207.1	PFAM:PF00254
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	UniProt:Q9SCY3	SUPFAM:SSF54534	UniParc:UPI00000A1CB6
SEG:seg	:	:	:	:	:

Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]

Coordinates

chr4:-:18426757..18428578

Molecular Weight (calculated)

23260.9 Da

IEP (calculated)

8.255

GRAVY (calculated)

0.013

Length

217 amino acids

Sequence
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.