Factsheet for Solyc04g054520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005630.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	Solyc12g005630.1.1	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056671	Potato	plastid	98.56	98.56
VIT_07s0031g01150.t01	Wine grape	plastid	66.51	67.48
KRH59400	Soybean	extracellular, vacuole	49.28	65.19
KRH43236	Soybean	nucleus	62.2	62.2
AT4G39710.1	Thale cress	plastid	63.16	60.83
GSMUA_Achr5P24380_001	Banana	plastid	61.72	55.13
CDY42648	Canola	plastid	52.63	55.0
Bra011839.1-P	Field mustard	plastid	52.15	54.5
CDY42000	Canola	plastid	52.15	54.5
Os02t0751600-01	Rice	plastid	55.5	50.43
Zm00001d018077_P002	Maize	plastid	53.11	49.12
KXG30740	Sorghum	plastid	52.63	48.67
TraesCS6A01G302500.1	Wheat	plastid	51.67	48.65
TraesCS6D01G282000.1	Wheat	plastid	51.67	48.65
TraesCS6B01G331700.1	Wheat	plastid	51.2	48.42
HORVU6Hr1G075080.2	Barley	plastid	51.67	45.76
Solyc09g057670.2.1	Tomato	extracellular	22.49	31.54
Solyc08g006540.2.1	Tomato	plastid	38.76	30.8
Solyc04g015040.2.1	Tomato	plastid	24.88	22.13
Solyc03g007170.2.1	Tomato	nucleus	24.88	10.83
Solyc01g091340.2.1	Tomato	nucleus	24.88	9.44
Solyc02g005290.2.1	Tomato	nucleus	22.97	9.27

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	UniProt:K4BSK7	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc04g054520.2	EnsemblPlants:Solyc04g054520.2.1
UniParc:UPI0002765837	:	:	:	:	:

Description

Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G39710) UniProtKB/Swiss-Prot;Acc:Q9SCY3]

Coordinates

chr4:-:52643858..52647968

Molecular Weight (calculated)

22383.1 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.008

Length

209 amino acids

Sequence
(BLAST)

001: MAVSSLSFTL PKLQTFTPKP TIAATFKASS SHESTPFINK KQIFQMGVGI LAASIVASAP LDADATRIEY YATTAEPTCE FNFVRSGLGY CDIAVGSGEE
101: APYNKLVNIH YTARFGDGIV FDSSYKRGRA LTMRLGMGKV IKGLDQGILG GEGVPPMLVG GKRKLQIPPH LAYGPEPAGC FSGDCNIPGN ATLVYDIKFV
201: ELYSGNRKM

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.