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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
plastid: 20363867
plastid: 22908117
extracellular: 29876421
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038848 Potato plastid 95.32 95.32
Bra037701.1-P Field mustard plastid 62.98 68.52
CDY23379 Canola plastid 62.98 68.52
CDY30419 Canola plastid 62.98 68.52
AT2G43560.1 Thale cress plastid 64.26 67.71
KRH24569 Soybean plastid 63.83 64.66
VIT_05s0094g00100.t01 Wine grape plastid 63.4 64.5
KRH29576 Soybean plastid 63.4 64.22
Zm00001d031696_P002 Maize plastid 60.0 60.26
TraesCS7D01G268300.1 Wheat plastid 57.87 57.87
GSMUA_Achr7P23820_001 Banana plastid 57.45 57.2
EES15264 Sorghum plastid 58.72 57.02
Os08t0541400-01 Rice plastid 59.57 53.64
TraesCS7B01G166000.2 Wheat plastid 50.64 44.91
TraesCS7A01G266500.2 Wheat plastid 51.06 44.78
HORVU7Hr1G056240.7 Barley endoplasmic reticulum, extracellular, mitochondrion 51.06 37.15
Solyc09g057670.2.1 Tomato extracellular 18.3 28.86
Solyc04g054520.2.1 Tomato nucleus 22.13 24.88
Solyc08g006540.2.1 Tomato plastid 24.26 21.67
Solyc03g007170.2.1 Tomato nucleus 20.43 10.0
Solyc01g091340.2.1 Tomato nucleus 20.0 8.53
Solyc02g005290.2.1 Tomato nucleus 16.6 7.53
Protein Annotations
MapMan:18.12.2Gene3D:3.10.50.40GO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016853GO:GO:0019538
InterPro:IPR001179UniProt:K4BQ07PFAM:PF00254InterPro:PPIase_FKBPInterPro:PPIase_FKBP_domPFscan:PS50059
PANTHER:PTHR43811PANTHER:PTHR43811:SF17SUPFAM:SSF54534EnsemblPlantsGene:Solyc04g015040.2EnsemblPlants:Solyc04g015040.2.1UniParc:UPI00027667F9
Description
Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:K4BQ07]
Coordinates
chr4:-:5242436..5247624
Molecular Weight (calculated)
25551.9 Da
IEP (calculated)
7.292
GRAVY (calculated)
-0.119
Length
235 amino acids
Sequence
(BLAST)
001: MASTSLVLPL SSAFSINLFK NHHQRIRKLQ TGNGVTREFG LRLWAQENLM GTVEEAERYN TTKRRDLVMG LGFCGVTSFL VGSCYAEAAG LPPEEKPKLC
101: DATCEKELEN VPMVTTESGL QYKDIKVGRG PSPPVGFQVA ANYVAMVPSG QIFDSSLEKG RPYIFRVGAD QVIKGLDEGI LSMKVGGLRR LYVPGSLAFP
201: KGLISAPGRP RVAPNSPLVF DVSLEFIPGL ESDEE
Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)
001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE
Arabidopsis Description
FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.