CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43560.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031696_P002	Maize	plastid	88.43	91.45
TraesCS7D01G268300.1	Wheat	plastid	76.03	78.3
Os08t0541400-01	Rice	plastid	78.51	72.8
Bra037701.1-P	Field mustard	plastid	59.09	66.2
CDY30419	Canola	plastid	59.09	66.2
CDY23379	Canola	plastid	58.68	65.74
KRH24569	Soybean	plastid	62.4	65.09
KRH29576	Soybean	plastid	61.98	64.66
AT2G43560.1	Thale cress	plastid	59.5	64.57
VIT_05s0094g00100.t01	Wine grape	plastid	61.57	64.5
GSMUA_Achr7P23820_001	Banana	plastid	62.4	63.98
TraesCS7A01G266500.2	Wheat	plastid	65.7	59.33
TraesCS7B01G166000.2	Wheat	plastid	64.88	59.25
Solyc04g015040.2.1	Tomato	plastid	57.02	58.72
PGSC0003DMT400038848	Potato	plastid	56.61	58.3
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	66.12	49.54
EER99137	Sorghum	endoplasmic reticulum	18.18	29.53
EES04100	Sorghum	endoplasmic reticulum	17.77	27.74
KXG30740	Sorghum	plastid	24.79	26.55
OQU76834	Sorghum	mitochondrion, plastid	26.45	22.54
KXG35300	Sorghum	nucleus	21.49	11.66
EES10880	Sorghum	nucleus	20.66	10.0

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EntrezGene:8060566	UniProt:C5YHA0	EnsemblPlants:EES15264	ProteinID:EES15264
ProteinID:EES15264.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179
PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF17
EnsemblPlantsGene:SORBI_3007G185100	SUPFAM:SSF54534	unigene:Sbi.7247	UniParc:UPI0001A87EEC	RefSeq:XP_002445769.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:61825686..61828082

Molecular Weight (calculated)

24574.5 Da

IEP (calculated)

5.962

GRAVY (calculated)

0.137

Length

242 amino acids

Sequence
(BLAST)

001: MAAAASSSAS PLLLPSGPRH ASASATAWLR GASAFRSRAL TSEAPCCCKA AGVGGSAAQC GAADEFLIGG GSSTRRGMVG VALGASALGL AAFDAVAAGL
101: PPEEKPKLCD AACETELENV PMVTTESGLQ YKDIKVGEGP SPPIGFQVAA NYVAMVPNGQ IFDSSLEKGQ PYIFRVGSGQ VIKGLDEGIL SMKVGGLRRL
201: YIPGPLAFPK GLTSAPGRPR VPPSSPVVFD VNLLYIPGLD DE

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.