Factsheet for VIT_05s0094g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23379	Canola	plastid	68.4	73.15
Bra037701.1-P	Field mustard	plastid	67.97	72.69
CDY30419	Canola	plastid	67.97	72.69
KRH29576	Soybean	plastid	71.0	70.69
KRH24569	Soybean	plastid	70.56	70.26
AT2G43560.1	Thale cress	plastid	67.53	69.96
Solyc04g015040.2.1	Tomato	plastid	64.5	63.4
Zm00001d031696_P002	Maize	plastid	63.64	62.82
PGSC0003DMT400038848	Potato	plastid	63.64	62.55
GSMUA_Achr7P23820_001	Banana	plastid	63.2	61.86
EES15264	Sorghum	plastid	64.5	61.57
TraesCS7D01G268300.1	Wheat	plastid	60.61	59.57
Os08t0541400-01	Rice	plastid	63.64	56.32
TraesCS7B01G166000.2	Wheat	plastid	51.08	44.53
TraesCS7A01G266500.2	Wheat	plastid	51.08	44.03
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	50.65	36.22
VIT_00s0260g00060.t01	Wine grape	endoplasmic reticulum	18.61	29.05
VIT_01s0011g00930.t01	Wine grape	plastid	25.11	26.85
VIT_07s0031g01150.t01	Wine grape	plastid	21.64	24.27
VIT_19s0093g00480.t01	Wine grape	nucleus	22.51	9.37
VIT_16s0022g01760.t01	Wine grape	nucleus	21.21	9.33

Protein Annotations

EntrezGene:100259438	wikigene:100259438	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:CBI24638	ProteinID:CBI24638.3
UniProt:D7T2A7	EMBL:FN595507	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	EntrezGene:LOC100259438	wikigene:LOC100259438	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF17	SUPFAM:SSF54534	TIGR:TC54544	UniParc:UPI00015CC431
ArrayExpress:VIT_05s0094g00100	EnsemblPlantsGene:VIT_05s0094g00100	EnsemblPlants:VIT_05s0094g00100.t01	unigene:Vvi.1490	RefSeq:XP_002274062	RefSeq:XP_002274062.2
SEG:seg	:	:	:	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7T2A7]

Coordinates

chr5:-:23476517..23482181

Molecular Weight (calculated)

24674.8 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.050

Length

231 amino acids

Sequence
(BLAST)

001: MASSPSSLLL SLGSGFARSL FPAHQSIPGD KIRSLNIRCS NLEVVVKSSR TGEYSDGLML KRREAIGLVL GVSSIFVDSF DAKAAGLPPE DKPRLCDDAC
101: EKELENVPMV TTESGLQYKD IKVGEGPSPP IGFQVAANYV AMVPSGQIFD SSLEKGQLYI FRVGSGQVIK GLDEGILTMK TGGKRRIYIP GPLAFPKGLT
201: SAPGRPRVAA NSPVVFDVSL EYIPGLEIDE E

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.