Factsheet for Zm00001d031696_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43560.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15264	Sorghum	plastid	91.45	88.43
TraesCS7D01G268300.1	Wheat	plastid	77.35	77.02
Os08t0541400-01	Rice	plastid	81.2	72.8
Bra037701.1-P	Field mustard	plastid	61.97	67.13
CDY30419	Canola	plastid	61.97	67.13
CDY23379	Canola	plastid	61.54	66.67
AT2G43560.1	Thale cress	plastid	62.82	65.92
KRH24569	Soybean	plastid	64.53	65.09
KRH29576	Soybean	plastid	63.68	64.22
VIT_05s0094g00100.t01	Wine grape	plastid	62.82	63.64
GSMUA_Achr7P23820_001	Banana	plastid	63.68	63.14
PGSC0003DMT400038848	Potato	plastid	60.26	60.0
Solyc04g015040.2.1	Tomato	plastid	60.26	60.0
TraesCS7A01G266500.2	Wheat	plastid	67.09	58.58
TraesCS7B01G166000.2	Wheat	plastid	65.81	58.11
HORVU7Hr1G056240.7	Barley	endoplasmic reticulum, extracellular, mitochondrion	67.52	48.92
Zm00001d046940_P001	Maize	plastid	24.79	27.23
Zm00001d042372_P002	Maize	endoplasmic reticulum, extracellular, golgi	17.95	27.1
Zm00001d018077_P002	Maize	plastid	25.21	26.11
Zm00001d021021_P001	Maize	endoplasmic reticulum	17.95	25.77
Zm00001d012064_P001	Maize	endoplasmic reticulum, extracellular, golgi	17.52	22.04
Zm00001d003535_P001	Maize	nucleus	9.4	15.71
Zm00001d019987_P001	Maize	cytosol	20.51	10.81
Zm00001d025522_P001	Maize	plasma membrane	21.37	10.1
Zm00001d005534_P001	Maize	nucleus	14.96	9.38

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A1D6KKS1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR001179	ProteinID:ONM03505.1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF17	SUPFAM:SSF54534	UniParc:UPI000842F719	EnsemblPlantsGene:Zm00001d031696
EnsemblPlants:Zm00001d031696_P002	EnsemblPlants:Zm00001d031696_T002	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase FKBP16-3 chloroplastic

Coordinates

chr1:+:198748160..198750079

Molecular Weight (calculated)

23864.8 Da

IEP (calculated)

8.271

GRAVY (calculated)

0.085

Length

234 amino acids

Sequence
(BLAST)

001: MAAAACSSAS PLLLPSGPRH ASASRAWFLG GRSRALRSEA PCCCKAAAAR GSAPQCGTVG GGSSSTRRGL LGVALGASAL GLAAFDAVAA GLPPEEKPKL
101: CDAACEGELE NVPMVTTESG LQYKDIKVGE GPSPPVGFQV AANYVAMVPT GQIFDSSLEK GQPYIFRVGS GQVIKGLDEG ILSMKVGGLR RLYIPGPLAF
201: PKGLTSAPGR PRVPPSSPVV FDVNLLYIPG LDDE

Best Arabidopsis Sequence Match ( AT2G43560.1 )
(BLAST)

001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE

Arabidopsis Description

FKBP16-3Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVY6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.