Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78269 | Sorghum | cytosol | 85.94 | 87.3 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 72.66 | 76.23 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 73.44 | 74.02 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 74.22 | 73.08 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 61.72 | 66.39 |
| Bra014037.1-P | Field mustard | cytosol | 58.59 | 63.56 |
| CDY36029 | Canola | cytosol | 58.59 | 63.56 |
| Bra036335.1-P | Field mustard | cytosol | 57.81 | 63.25 |
| AT5G42980.1 | Thale cress | cytosol | 57.03 | 61.86 |
| CDY53958 | Canola | cytosol | 56.25 | 61.54 |
| AT1G45145.1 | Thale cress | cytosol | 56.25 | 61.02 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 53.91 | 60.53 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 50.0 | 56.14 |
| Solyc04g080850.2.1 | Tomato | extracellular | 53.12 | 55.28 |
| KRH51778 | Soybean | endoplasmic reticulum | 49.22 | 53.85 |
| KRH61100 | Soybean | cytosol | 49.22 | 53.85 |
| PGSC0003DMT400009623 | Potato | cytosol | 51.56 | 53.66 |
| CDY43592 | Canola | cytosol | 50.0 | 52.03 |
| CDY32970 | Canola | cytosol | 50.0 | 52.03 |
| Bra027469.1-P | Field mustard | cytosol | 50.0 | 52.03 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 48.44 | 51.67 |
| CDY39355 | Canola | cytosol | 47.66 | 51.26 |
| AT1G19730.1 | Thale cress | cytosol | 47.66 | 51.26 |
| Bra025762.1-P | Field mustard | cytosol | 47.66 | 51.26 |
| CDY29406 | Canola | cytosol | 47.66 | 51.26 |
| Zm00001d007800_P001 | Maize | cytosol | 47.66 | 50.83 |
| Zm00001d019034_P001 | Maize | cytosol, extracellular, mitochondrion | 48.44 | 50.82 |
| KRH05879 | Soybean | endoplasmic reticulum | 47.66 | 49.59 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 44.53 | 49.57 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 43.75 | 49.56 |
| KRH28739 | Soybean | cytosol | 46.09 | 49.17 |
| KRH15131 | Soybean | cytosol, nucleus | 45.31 | 48.74 |
| PGSC0003DMT400009306 | Potato | cytosol | 44.53 | 48.31 |
| Solyc02g084710.2.1 | Tomato | extracellular | 43.75 | 47.46 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 41.41 | 46.49 |
| Zm00001d019035_P001 | Maize | cytosol | 38.28 | 38.89 |
| Zm00001d034491_P001 | Maize | plastid | 38.28 | 36.84 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 45.31 | 36.71 |
| Zm00001d037499_P001 | Maize | cytosol | 37.5 | 36.09 |
| Zm00001d039710_P004 | Maize | cytosol | 33.59 | 29.86 |
| Zm00001d026368_P001 | Maize | cytosol, extracellular | 26.56 | 26.36 |
| Zm00001d038486_P002 | Maize | cytosol | 27.34 | 24.48 |
| Zm00001d024835_P001 | Maize | plastid | 33.59 | 23.89 |
| Zm00001d010871_P001 | Maize | plastid | 35.16 | 22.39 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | ProteinID:AQK87098.1 | ProteinID:AQK87099.1 | UniProt:B6SHW5 |
| EMBL:EU952330 | EMBL:EU952613 | EMBL:EU960336 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0000D6F0F7 | EnsemblPlantsGene:Zm00001d038652 |
| EnsemblPlants:Zm00001d038652_P003 | EnsemblPlants:Zm00001d038652_T003 | SEG:seg | : | : | : |
Description
Thioredoxin H4
Coordinates
chr6:+:161892117..161896560
Molecular Weight (calculated)
13911.9 Da
IEP (calculated)
4.625
GRAVY (calculated)
0.139
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASEAAAAA ATPVTPTEGT VIAIHSLEEW SIQIEEANSA KKLVVIDFTA TWCPPCRAMA PIFADMAKKS PNVVFLKVDV DEMKTIAEQF SVEAMPTFLF
101: MREGDVKDRV VGAAKEELAR KLELHMAS
101: MREGDVKDRV VGAAKEELAR KLELHMAS
001: MAAEGEVIAC HTVEDWTEKL KAANESKKLI VIDFTATWCP PCRFIAPVFA DLAKKHLDVV FFKVDVDELN TVAEEFKVQA MPTFIFMKEG EIKETVVGAA
101: KEEIIANLEK HKTVVAAA
101: KEEIIANLEK HKTVVAAA
Arabidopsis Description
TRX3Thioredoxin H3 [Source:UniProtKB/Swiss-Prot;Acc:Q42403]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.