Factsheet for Zm00001d046962_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31467	Canola	plastid	71.3	33.33
Zm00001d004171_P002	Maize	extracellular, plastid	83.48	15.17
Zm00001d045451_P001	Maize	plastid	96.52	15.08
Solyc10g018300.1.1	Tomato	plastid	90.43	14.04
VIT_16s0022g01440.t01	Wine grape	plastid	88.7	13.99
PGSC0003DMT400056799	Potato	cytosol, plastid	89.57	13.9
Bra007555.1-P	Field mustard	plastid	87.83	13.69
PGSC0003DMT400018062	Potato	cytosol, extracellular	88.7	13.67
AT3G60750.1	Thale cress	plastid	87.83	13.63
Bra014473.1-P	Field mustard	plastid	86.96	13.61
Bra004898.1-P	Field mustard	plastid	85.22	13.32
AT2G45290.1	Thale cress	plastid	85.22	13.23
Solyc05g050970.2.1	Tomato	plastid	88.7	13.18
VIT_15s0048g00370.t01	Wine grape	plastid	84.35	13.02
Bra003426.1-P	Field mustard	cytosol	46.96	11.69
OQU80099	Sorghum	plastid	4.35	6.02
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	21.74	4.88

Protein Annotations

EnsemblPlants:Zm00001d046962_P002	EnsemblPlants:Zm00001d046962_T002	EnsemblPlantsGene:Zm00001d046962	Gene3D:3.40.50.970	InterPro:THDP-binding	InterPro:Transketolase_N
InterPro:Transketolase_fam	KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	PANTHER:PTHR43522
PANTHER:PTHR43522:SF3	PFAM:PF00456	ProteinID:AQL05262.1	ProteinID:AQL05263.1	SUPFAM:SSF52518	UniParc:UPI000844D0C4
UniProt:A0A1D6P5P4	MapMan:35.1	:	:	:	:

Description

Transketolase-1 chloroplastic

Coordinates

chr9:-:113277961..113279886

Molecular Weight (calculated)

12290.3 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.174

Length

115 amino acids

Sequence
(BLAST)

001: MEGIANEACS LAGHWGLGKL IAFYDDNHIS IDGDTEIAFT EDVSTCFDAL GWHTIWVKNG NTGYDDIRAA IKEAKAVTDK PTLIKVTTTI GFGSPNKANS
101: YSVHGSALGA KEVRS

Best Arabidopsis Sequence Match ( AT3G60750.2 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEDLKQFRQW GSKTPGHPEN FETPGIEVTT GPLGQGIANA
201: VGLALAEKHL AARFNKPDAE VVDHYTYAIL GDGCQMEGIS NEACSLAGHW GLGKLIAFYD DNHISIDGDT EIAFTENVDQ RFEALGWHVI WVKNGNTGYD
301: EIRAAIKEAK TVTDKPTLIK VTTTIGYGSP NKANSYSVHG AALGEKEVEA TRNNLGWPYE PFQVPDDVKS HWSRHTPEGA TLESDWSAKF AAYEKKYPEE
401: ASELKSIITG ELPAGWEKAL PTYTPESPGD ATRNLSQQCL NALAKVVPGF LGGSADLASS NMTLLKAFGD FQKATPEERN LRFGVREHGM GAICNGIALH
501: SPGLIPYCAT FFVFTDYMRG AMRISALSEA GVIYVMTHDS IGLGEDGPTH QPIEHIASFR AMPNTLMFRP ADGNETAGAY KIAVTKRKTP SILALSRQKL
601: PHLPGTSIEG VEKGGYTISD DSSGNKPDVI LIGTGSELEI AAQAAEVLRK DGKTVRVVSF VCWELFDEQS DEYKESVLPS DVSARVSIEA ASTFGWGKIV
701: GGKGKSIGIN SFGASAPAPL LYKEFGITVE AVVDAAKSFF

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.