Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 unclear: 26455813 plastid: 28183294 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400056799 | Potato | cytosol, plastid | 98.79 | 98.79 |
Zm00001d046962_P002 | Maize | cytosol | 14.04 | 90.43 |
Solyc05g050970.2.1 | Tomato | plastid | 88.39 | 84.63 |
Os06t0133800-01 | Rice | extracellular, plastid | 75.98 | 83.04 |
TraesCSU01G063400.1 | Wheat | peroxisome | 70.45 | 82.46 |
TraesCS7A01G071100.2 | Wheat | peroxisome | 70.18 | 82.15 |
HORVU7Hr1G013600.3 | Barley | peroxisome | 74.36 | 80.79 |
GSMUA_AchrUn_... | Banana | cytosol | 47.1 | 80.23 |
GSMUA_Achr3P11500_001 | Banana | cytosol | 15.38 | 79.72 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 18.49 | 79.65 |
Bra014473.1-P | Field mustard | plastid | 78.81 | 79.46 |
AT3G60750.1 | Thale cress | plastid | 79.35 | 79.35 |
GSMUA_Achr9P20740_001 | Banana | peroxisome | 63.97 | 79.26 |
CDY41143 | Canola | plastid | 78.81 | 79.13 |
CDX89074 | Canola | plastid | 78.41 | 79.05 |
Bra007555.1-P | Field mustard | plastid | 78.54 | 78.86 |
CDY48374 | Canola | plastid | 78.14 | 78.78 |
VIT_16s0022g01440.t01 | Wine grape | plastid | 77.33 | 78.6 |
CDX71785 | Canola | plastid | 78.27 | 78.48 |
Bra003426.1-P | Field mustard | cytosol | 48.85 | 78.36 |
AT2G45290.1 | Thale cress | plastid | 78.27 | 78.27 |
CDX74726 | Canola | plastid | 76.38 | 76.9 |
CDY68196 | Canola | plastid | 76.25 | 76.77 |
Bra004898.1-P | Field mustard | plastid | 76.25 | 76.77 |
VIT_15s0048g00370.t01 | Wine grape | plastid | 75.98 | 75.57 |
TraesCS7D01G066500.1 | Wheat | plastid | 75.57 | 75.17 |
GSMUA_Achr3P11550_001 | Banana | plastid | 76.11 | 75.1 |
GSMUA_Achr1P19800_001 | Banana | plastid | 65.45 | 72.28 |
CDX67840 | Canola | mitochondrion | 49.12 | 72.22 |
CDY56727 | Canola | cytosol, mitochondrion, peroxisome, plastid | 32.93 | 69.91 |
GSMUA_Achr3P11490_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 36.3 | 64.98 |
OQU80099 | Sorghum | plastid | 5.53 | 49.4 |
Solyc01g018020.1.1 | Tomato | plastid | 46.69 | 43.96 |
KRH75956 | Soybean | cytosol, peroxisome, plasma membrane, plastid | 26.45 | 38.28 |
Protein Annotations
KEGG:00030+2.2.1.1 | KEGG:00710+2.2.1.1 | KEGG:00730+2.2.1.7 | KEGG:00900+2.2.1.7 | MapMan:1.2.7 | Gene3D:3.40.50.920 |
Gene3D:3.40.50.970 | MapMan:3.9.2.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004802 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0016740 | InterPro:IPR009014 | UniProt:K4CYV4 | PFAM:PF00456 | PFAM:PF02779 |
PFAM:PF02780 | ScanProsite:PS00801 | ScanProsite:PS00802 | PANTHER:PTHR43522 | PANTHER:PTHR43522:SF7 | SMART:SM00861 |
SUPFAM:SSF52518 | SUPFAM:SSF52922 | EnsemblPlantsGene:Solyc10g018300.1 | EnsemblPlants:Solyc10g018300.1.1 | InterPro:THDP-binding | TIGRFAMs:TIGR00232 |
InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd | InterPro:Transketolase_BS | InterPro:Transketolase_C | InterPro:Transketolase_N | InterPro:Transketolase_bac-like |
InterPro:Transketolase_fam | UniParc:UPI000276C781 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:-:7364074..7367105
Molecular Weight (calculated)
79923.5 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.211
Length
741 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSLTLS QAIFSPSLPR HGSSSSSSPS ISFSTFSGLK STPFTSSHRR ILPSTTVTKQ HFSVRASSAV ETLEKTDAAI VEKSVNTIRF LAIDAVEKAN
101: SGHPGLPMGC APMGHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV QEDDLKSFRQ WGSKIPGHPE NFETPGVEVT TGPLGQGIAN
201: AVGLAVAEKH LAARFNKPDA EIVDHYTYVI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTEDVS ARFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KSVKDKPTMI KVTTTIGFGS PNKANSYSVH GSALGAKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALETEWNAK FAEYEKKYAE
401: EAADLKSIIT GELPAGWEKA LPTYTPESPA DATRNLSQQN LNALAKVVPG FLGGSADLAS SNMTLLKMFG DFQKNTPEER NLRFGVREHG MGAICNGIAL
501: HSLGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLASF RAMPNILMFR PADGNETAGA YKVAVLKRKT PSILALSRQK
601: LPQLAGTSIE GAAKGGYIVS DNSSGNKPDV ILIGTGSELE IAVKAAEELK KEGKTVRVVS FVCWELYDEQ SAEYKESVLP SSVTARVSIE AGSTFGWQKF
701: VGDKGKAIGV DGFGASAPAD KIYKEFGITA EAVVAAAKQV S
101: SGHPGLPMGC APMGHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV QEDDLKSFRQ WGSKIPGHPE NFETPGVEVT TGPLGQGIAN
201: AVGLAVAEKH LAARFNKPDA EIVDHYTYVI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTEDVS ARFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KSVKDKPTMI KVTTTIGFGS PNKANSYSVH GSALGAKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALETEWNAK FAEYEKKYAE
401: EAADLKSIIT GELPAGWEKA LPTYTPESPA DATRNLSQQN LNALAKVVPG FLGGSADLAS SNMTLLKMFG DFQKNTPEER NLRFGVREHG MGAICNGIAL
501: HSLGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLASF RAMPNILMFR PADGNETAGA YKVAVLKRKT PSILALSRQK
601: LPQLAGTSIE GAAKGGYIVS DNSSGNKPDV ILIGTGSELE IAVKAAEELK KEGKTVRVVS FVCWELYDEQ SAEYKESVLP SSVTARVSIE AGSTFGWQKF
701: VGDKGKAIGV DGFGASAPAD KIYKEFGITA EAVVAAAKQV S
001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F
Arabidopsis Description
TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.