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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056799 Potato cytosol, plastid 98.79 98.79
Zm00001d046962_P002 Maize cytosol 14.04 90.43
Solyc05g050970.2.1 Tomato plastid 88.39 84.63
Os06t0133800-01 Rice extracellular, plastid 75.98 83.04
TraesCSU01G063400.1 Wheat peroxisome 70.45 82.46
TraesCS7A01G071100.2 Wheat peroxisome 70.18 82.15
HORVU7Hr1G013600.3 Barley peroxisome 74.36 80.79
GSMUA_AchrUn_... Banana cytosol 47.1 80.23
GSMUA_Achr3P11500_001 Banana cytosol 15.38 79.72
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 18.49 79.65
Bra014473.1-P Field mustard plastid 78.81 79.46
AT3G60750.1 Thale cress plastid 79.35 79.35
GSMUA_Achr9P20740_001 Banana peroxisome 63.97 79.26
CDY41143 Canola plastid 78.81 79.13
CDX89074 Canola plastid 78.41 79.05
Bra007555.1-P Field mustard plastid 78.54 78.86
CDY48374 Canola plastid 78.14 78.78
VIT_16s0022g01440.t01 Wine grape plastid 77.33 78.6
CDX71785 Canola plastid 78.27 78.48
Bra003426.1-P Field mustard cytosol 48.85 78.36
AT2G45290.1 Thale cress plastid 78.27 78.27
CDX74726 Canola plastid 76.38 76.9
CDY68196 Canola plastid 76.25 76.77
Bra004898.1-P Field mustard plastid 76.25 76.77
VIT_15s0048g00370.t01 Wine grape plastid 75.98 75.57
TraesCS7D01G066500.1 Wheat plastid 75.57 75.17
GSMUA_Achr3P11550_001 Banana plastid 76.11 75.1
GSMUA_Achr1P19800_001 Banana plastid 65.45 72.28
CDX67840 Canola mitochondrion 49.12 72.22
CDY56727 Canola cytosol, mitochondrion, peroxisome, plastid 32.93 69.91
GSMUA_Achr3P11490_001 Banana cytosol, mitochondrion, peroxisome, plastid 36.3 64.98
OQU80099 Sorghum plastid 5.53 49.4
Solyc01g018020.1.1 Tomato plastid 46.69 43.96
KRH75956 Soybean cytosol, peroxisome, plasma membrane, plastid 26.45 38.28
Protein Annotations
KEGG:00030+2.2.1.1KEGG:00710+2.2.1.1KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7MapMan:1.2.7Gene3D:3.40.50.920
Gene3D:3.40.50.970MapMan:3.9.2.3GO:GO:0003674GO:GO:0003824GO:GO:0004802GO:GO:0008150
GO:GO:0008152GO:GO:0016740InterPro:IPR009014UniProt:K4CYV4PFAM:PF00456PFAM:PF02779
PFAM:PF02780ScanProsite:PS00801ScanProsite:PS00802PANTHER:PTHR43522PANTHER:PTHR43522:SF7SMART:SM00861
SUPFAM:SSF52518SUPFAM:SSF52922EnsemblPlantsGene:Solyc10g018300.1EnsemblPlants:Solyc10g018300.1.1InterPro:THDP-bindingTIGRFAMs:TIGR00232
InterPro:Transketo_C/PFOR_IIInterPro:Transketolase-like_Pyr-bdInterPro:Transketolase_BSInterPro:Transketolase_CInterPro:Transketolase_NInterPro:Transketolase_bac-like
InterPro:Transketolase_famUniParc:UPI000276C781SEG:seg:::
Description
No Description!
Coordinates
chr10:-:7364074..7367105
Molecular Weight (calculated)
79923.5 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.211
Length
741 amino acids
Sequence
(BLAST)
001: MASSSSLTLS QAIFSPSLPR HGSSSSSSPS ISFSTFSGLK STPFTSSHRR ILPSTTVTKQ HFSVRASSAV ETLEKTDAAI VEKSVNTIRF LAIDAVEKAN
101: SGHPGLPMGC APMGHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV QEDDLKSFRQ WGSKIPGHPE NFETPGVEVT TGPLGQGIAN
201: AVGLAVAEKH LAARFNKPDA EIVDHYTYVI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTEDVS ARFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KSVKDKPTMI KVTTTIGFGS PNKANSYSVH GSALGAKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALETEWNAK FAEYEKKYAE
401: EAADLKSIIT GELPAGWEKA LPTYTPESPA DATRNLSQQN LNALAKVVPG FLGGSADLAS SNMTLLKMFG DFQKNTPEER NLRFGVREHG MGAICNGIAL
501: HSLGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLASF RAMPNILMFR PADGNETAGA YKVAVLKRKT PSILALSRQK
601: LPQLAGTSIE GAAKGGYIVS DNSSGNKPDV ILIGTGSELE IAVKAAEELK KEGKTVRVVS FVCWELYDEQ SAEYKESVLP SSVTARVSIE AGSTFGWQKF
701: VGDKGKAIGV DGFGASAPAD KIYKEFGITA EAVVAAAKQV S
Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)
001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F
Arabidopsis Description
TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.